RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeastyeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
BDF1YLR399C SGS1P35187 1447 aa19.36■□□□□ 0.69
BDF1YLR399C SPA2P23201 1466 aaKnown RBP19.25■□□□□ 0.67
BDF1YLR399C SSN2P38931 1420 aa19.03■□□□□ 0.64
BDF1YLR399C DRS1P32892 752 aaKnown RBP18.54■□□□□ 0.56
BDF1YLR399C INO80P53115 1489 aa18.49■□□□□ 0.55
BDF1YLR399C SKI3P17883 1432 aaKnown RBP18.21■□□□□ 0.51
BDF1YLR399C TCB3Q03640 1545 aaKnown RBP17.84■□□□□ 0.45
BDF1YLR399C NOP2P40991 618 aaKnown RBP17.82■□□□□ 0.44
BDF1YLR399C NSR1P27476 414 aaKnown RBP RIP-Chip data17.7■□□□□ 0.42not detected
BDF1YLR399C MMS22Q06164 1454 aa17.61■□□□□ 0.41
BDF1YLR399C CHD1P32657 1468 aa17.53■□□□□ 0.4
BDF1YLR399C TY1B-DR4Q07793 1604 aa17.51■□□□□ 0.39
BDF1YLR399C HSL1P34244 1518 aa17.5■□□□□ 0.39
BDF1YLR399C SPT6P23615 1451 aaKnown RBP17.43■□□□□ 0.38
BDF1YLR399C XRN1P22147 1528 aaKnown RBP17.38■□□□□ 0.37
BDF1YLR399C RSE1Q04693 1361 aaKnown RBP17.37■□□□□ 0.37
BDF1YLR399C BFR2Q06631 534 aaKnown RBP17.29■□□□□ 0.36
BDF1YLR399C HIR3P47171 1648 aa17.26■□□□□ 0.35
BDF1YLR399C UFD4P33202 1483 aa17.22■□□□□ 0.35
BDF1YLR399C REV3P14284 1504 aa17.16■□□□□ 0.34
BDF1YLR399C SAS10Q12136 610 aaPredicted RBP17.12■□□□□ 0.33
BDF1YLR399C THO2P53552 1597 aaKnown RBP17.11■□□□□ 0.33
BDF1YLR399C TAF2P23255 1407 aa17.1■□□□□ 0.33
BDF1YLR399C TRM732Q03496 1420 aa17.09■□□□□ 0.33
BDF1YLR399C SSK2P53599 1579 aa17.02■□□□□ 0.31
BDF1YLR399C SIN3P22579 1536 aa17.01■□□□□ 0.31
BDF1YLR399C IKI3Q06706 1349 aaKnown RBP16.99■□□□□ 0.31
BDF1YLR399C STU1P38198 1513 aa16.98■□□□□ 0.31
BDF1YLR399C MYO2P19524 1574 aaKnown RBP16.93■□□□□ 0.3
BDF1YLR399C YTA7P40340 1379 aa16.92■□□□□ 0.3
BDF1YLR399C SPP41P38904 1435 aa16.9■□□□□ 0.3
BDF1YLR399C ENP1P38333 483 aaKnown RBP16.9■□□□□ 0.3
BDF1YLR399C POL1P13382 1468 aa16.86■□□□□ 0.29
BDF1YLR399C BPT1P14772 1559 aa16.85■□□□□ 0.29
BDF1YLR399C ESP1Q03018 1630 aa16.81■□□□□ 0.28
BDF1YLR399C MON2P48563 1636 aaPredicted RBP16.8■□□□□ 0.28
BDF1YLR399C SSM4P40318 1319 aa16.78■□□□□ 0.28
BDF1YLR399C SCC2Q04002 1493 aa16.77■□□□□ 0.28
BDF1YLR399C POL5P39985 1022 aaKnown RBP16.76■□□□□ 0.27
BDF1YLR399C SWR1Q05471 1514 aa16.66■□□□□ 0.26
BDF1YLR399C SPT7P35177 1332 aa16.64■□□□□ 0.26
BDF1YLR399C NUP170P38181 1502 aa16.61■□□□□ 0.25
BDF1YLR399C STH1P32597 1359 aa16.6■□□□□ 0.25
BDF1YLR399C ECM5Q03214 1411 aa16.59■□□□□ 0.25
BDF1YLR399C DNA2P38859 1522 aa16.55■□□□□ 0.24
BDF1YLR399C MYO4P32492 1471 aa16.54■□□□□ 0.24
BDF1YLR399C RTT106P40161 455 aa16.53■□□□□ 0.24
BDF1YLR399C TAF7Q05021 590 aa16.53■□□□□ 0.24
BDF1YLR399C YPK9Q12697 1472 aa16.52■□□□□ 0.23
BDF1YLR399C YOR1P53049 1477 aa16.51■□□□□ 0.23
BDF1YLR399C RKR1Q04781 1562 aa16.49■□□□□ 0.23
BDF1YLR399C SEC3P33332 1336 aaKnown RBP16.49■□□□□ 0.23
BDF1YLR399C BUD4P47136 1447 aa16.46■□□□□ 0.23
BDF1YLR399C SNQ2P32568 1501 aaKnown RBP16.44■□□□□ 0.22
BDF1YLR399C PAN1P32521 1480 aa16.43■□□□□ 0.22
BDF1YLR399C CAB3P36076 571 aa16.42■□□□□ 0.22
BDF1YLR399C IFH1P39520 1085 aa16.42■□□□□ 0.22
BDF1YLR399C SMC4Q12267 1418 aa16.42■□□□□ 0.22
BDF1YLR399C PRS1P32895 427 aaKnown RBP16.41■□□□□ 0.22
BDF1YLR399C EBP2P36049 427 aaKnown RBP16.34■□□□□ 0.21
BDF1YLR399C YPR148CQ06523 435 aa16.34■□□□□ 0.21
BDF1YLR399C ATG2P53855 1592 aa16.33■□□□□ 0.2
BDF1YLR399C GEA1P47102 1408 aaPredicted RBP16.32■□□□□ 0.2
BDF1YLR399C TSC11P40061 1430 aa16.32■□□□□ 0.2
BDF1YLR399C PDR10P51533 1564 aa16.32■□□□□ 0.2
BDF1YLR399C YCF1P39109 1515 aaKnown RBP16.27■□□□□ 0.2
BDF1YLR399C MLP2P40457 1679 aa16.27■□□□□ 0.19
BDF1YLR399C LEU3P08638 886 aa16.26■□□□□ 0.19
BDF1YLR399C PDR15Q04182 1529 aaKnown RBP16.26■□□□□ 0.19
BDF1YLR399C TOP2P06786 1428 aaKnown RBP16.22■□□□□ 0.19
BDF1YLR399C KOG1P38873 1557 aa16.2■□□□□ 0.18
BDF1YLR399C RPO31P04051 1460 aa16.19■□□□□ 0.18
BDF1YLR399C PEP1P32319 1579 aa16.12■□□□□ 0.17
BDF1YLR399C TFA1P36100 482 aa16.1■□□□□ 0.17
BDF1YLR399C PSD2P53037 1138 aaKnown RBP16.09■□□□□ 0.17
BDF1YLR399C ULS1Q08562 1619 aa16.07■□□□□ 0.16
BDF1YLR399C SRB8P25648 1427 aa16.05■□□□□ 0.16
BDF1YLR399C CFT1Q06632 1357 aaKnown RBP16.05■□□□□ 0.16
BDF1YLR399C TY3B-GQ99315 1547 aa16.04■□□□□ 0.16
BDF1YLR399C VPS15P22219 1454 aa16.02■□□□□ 0.16
BDF1YLR399C TY1B-DR3Q99231 1755 aa16.01■□□□□ 0.15
BDF1YLR399C YLR419WQ06698 1435 aaKnown RBP15.99■□□□□ 0.15
BDF1YLR399C TY2B-LR1P0C2J3 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-FP0CX63 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-GR2P0CX64 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-CP25384 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-DR2Q03494 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY1B-DR1Q03855 1755 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-DR3Q07791 1770 aaKnown RBP15.95■□□□□ 0.14
BDF1YLR399C TY2B-OR1Q12113 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-DR1Q12472 1770 aa15.95■□□□□ 0.14
BDF1YLR399C TY2B-OR2Q12501 1770 aa15.95■□□□□ 0.14
BDF1YLR399C IME2P32581 645 aa15.93■□□□□ 0.14
BDF1YLR399C DNF1P32660 1571 aa15.93■□□□□ 0.14
BDF1YLR399C NUP159P40477 1460 aa15.92■□□□□ 0.14
BDF1YLR399C ORC1P54784 914 aaPredicted RBP15.89■□□□□ 0.13
BDF1YLR399C MHP1P43638 1398 aa15.88■□□□□ 0.13
BDF1YLR399C CLC1P17891 233 aa15.87■□□□□ 0.13
BDF1YLR399C FUN12P39730 1002 aaKnown RBP15.87■□□□□ 0.13
BDF1YLR399C YFR016CP43597 1233 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 5,963 RNA–protein pairs in 59.6 ms