Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.84■□□□□ 0.45
RAE1P78406 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 AC007613.1-201ENST00000572811 2597 ntBASIC17.84■□□□□ 0.45
RAE1P78406 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.84■□□□□ 0.45
RAE1P78406 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.84■□□□□ 0.45
RAE1P78406 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.84■□□□□ 0.45
RAE1P78406 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.84■□□□□ 0.45
RAE1P78406 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.84■□□□□ 0.45
RAE1P78406 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.84■□□□□ 0.45
RAE1P78406 SLC25A1P4-201ENST00000567977 778 ntBASIC17.84■□□□□ 0.45
RAE1P78406 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
RAE1P78406 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.84■□□□□ 0.45
RAE1P78406 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
RAE1P78406 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.84■□□□□ 0.45
RAE1P78406 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.84■□□□□ 0.45
RAE1P78406 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.84■□□□□ 0.45
RAE1P78406 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
RAE1P78406 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
RAE1P78406 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
RAE1P78406 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.83■□□□□ 0.45
RAE1P78406 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
RAE1P78406 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
RAE1P78406 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
RAE1P78406 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RAE1P78406 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RAE1P78406 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RAE1P78406 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.83■□□□□ 0.44
RAE1P78406 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.83■□□□□ 0.44
RAE1P78406 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.83■□□□□ 0.44
RAE1P78406 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.83■□□□□ 0.44
RAE1P78406 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RAE1P78406 AC097488.1-201ENST00000507834 756 ntBASIC17.83■□□□□ 0.44
RAE1P78406 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.83■□□□□ 0.44
RAE1P78406 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.83■□□□□ 0.44
RAE1P78406 AP001412.1-201ENST00000608405 714 ntBASIC17.83■□□□□ 0.44
RAE1P78406 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
RAE1P78406 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RAE1P78406 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
RAE1P78406 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RAE1P78406 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
RAE1P78406 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.83■□□□□ 0.44
RAE1P78406 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
RAE1P78406 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.82■□□□□ 0.44
RAE1P78406 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
RAE1P78406 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.82■□□□□ 0.44
RAE1P78406 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.82■□□□□ 0.44
RAE1P78406 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.82■□□□□ 0.44
RAE1P78406 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 AC008556.1-201ENST00000610908 2040 ntBASIC17.82■□□□□ 0.44
RAE1P78406 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RAE1P78406 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
RAE1P78406 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
RAE1P78406 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RAE1P78406 AL354751.1-201ENST00000412768 1863 ntBASIC17.82■□□□□ 0.44
RAE1P78406 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
RAE1P78406 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RAE1P78406 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
RAE1P78406 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.81■□□□□ 0.44
RAE1P78406 KRT8P45-201ENST00000414328 1447 ntBASIC17.81■□□□□ 0.44
RAE1P78406 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.81■□□□□ 0.44
RAE1P78406 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
RAE1P78406 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.81■□□□□ 0.44
RAE1P78406 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RAE1P78406 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms