Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BLOC1S4Q9NUP1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
BLOC1S4Q9NUP1 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
BLOC1S4Q9NUP1 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
BLOC1S4Q9NUP1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
BLOC1S4Q9NUP1 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 MCCD1P1-208ENST00000445732 328 ntBASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 TSPY17P-201ENST00000450329 467 ntBASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 C2orf69P3-201ENST00000565542 1120 ntBASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 AC104581.1-202ENST00000635932 2618 ntBASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.91■□□□□ 0.94
BLOC1S4Q9NUP1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 EGLN1P1-201ENST00000531623 762 ntBASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 AC009113.1-201ENST00000570267 2443 ntBASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.9■□□□□ 0.94
BLOC1S4Q9NUP1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BLOC1S4Q9NUP1 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BLOC1S4Q9NUP1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.94
BLOC1S4Q9NUP1 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BLOC1S4Q9NUP1 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
BLOC1S4Q9NUP1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.89■□□□□ 0.94
BLOC1S4Q9NUP1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 AC120498.9-201ENST00000339021 3867 ntBASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 MIR564-202ENST00000385049 94 ntBASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 AC005082.1-201ENST00000413042 2259 ntBASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 AC126763.1-201ENST00000552015 2118 ntBASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
BLOC1S4Q9NUP1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms