Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
CNOT4O95628 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CNOT4O95628 LIN28AP1-201ENST00000429574 405 ntBASIC16.72■□□□□ 0.27
CNOT4O95628 DUX4L26-201ENST00000489078 1255 ntBASIC16.72■□□□□ 0.27
CNOT4O95628 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.72■□□□□ 0.27
CNOT4O95628 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CNOT4O95628 AC087388.1-201ENST00000571370 1112 ntBASIC16.72■□□□□ 0.27
CNOT4O95628 NTF6B-201ENST00000591913 560 ntBASIC16.72■□□□□ 0.27
CNOT4O95628 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CNOT4O95628 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CNOT4O95628 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CNOT4O95628 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CNOT4O95628 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.72■□□□□ 0.27
CNOT4O95628 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CNOT4O95628 TEX21P-204ENST00000641479 1693 ntBASIC16.72■□□□□ 0.27
CNOT4O95628 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
CNOT4O95628 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CNOT4O95628 KRT8P3-201ENST00000519669 1449 ntBASIC16.71■□□□□ 0.27
CNOT4O95628 AC073508.3-201ENST00000619697 1419 ntBASIC16.71■□□□□ 0.27
CNOT4O95628 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CNOT4O95628 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.71■□□□□ 0.27
CNOT4O95628 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.71■□□□□ 0.27
CNOT4O95628 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.71■□□□□ 0.27
CNOT4O95628 AC141586.3-201ENST00000562166 1838 ntBASIC16.71■□□□□ 0.27
CNOT4O95628 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CNOT4O95628 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CNOT4O95628 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.71■□□□□ 0.27
CNOT4O95628 ECEL1P2-202ENST00000465689 757 ntBASIC16.71■□□□□ 0.27
CNOT4O95628 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.71■□□□□ 0.27
CNOT4O95628 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CNOT4O95628 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.71■□□□□ 0.27
CNOT4O95628 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.71■□□□□ 0.27
CNOT4O95628 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.71■□□□□ 0.27
CNOT4O95628 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CNOT4O95628 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.7■□□□□ 0.26
CNOT4O95628 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 FEM1AP3-201ENST00000403722 1741 ntBASIC16.7■□□□□ 0.26
CNOT4O95628 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.7■□□□□ 0.26
CNOT4O95628 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.7■□□□□ 0.26
CNOT4O95628 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.7■□□□□ 0.26
CNOT4O95628 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.7■□□□□ 0.26
CNOT4O95628 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.7■□□□□ 0.26
CNOT4O95628 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
CNOT4O95628 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CNOT4O95628 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CNOT4O95628 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CNOT4O95628 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CNOT4O95628 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.7■□□□□ 0.26
CNOT4O95628 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CNOT4O95628 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.69■□□□□ 0.26
CNOT4O95628 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.69■□□□□ 0.26
CNOT4O95628 AL158211.5-201ENST00000623583 2518 ntBASIC16.69■□□□□ 0.26
CNOT4O95628 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CNOT4O95628 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.69■□□□□ 0.26
CNOT4O95628 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CNOT4O95628 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms