Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHISA3A0PJX4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 AC016769.1-201ENST00000409132 1010 ntBASIC16.41■□□□□ 0.22
SHISA3A0PJX4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 TSPY21P-201ENST00000433481 731 ntBASIC16.41■□□□□ 0.22
SHISA3A0PJX4 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 AC108860.2-201ENST00000562760 2183 ntBASIC16.41■□□□□ 0.22
SHISA3A0PJX4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHISA3A0PJX4 SIRPAP1-201ENST00000448467 1770 ntBASIC16.41■□□□□ 0.22
SHISA3A0PJX4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 SLC25A6P5-201ENST00000435663 894 ntBASIC16.4■□□□□ 0.22
SHISA3A0PJX4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.4■□□□□ 0.22
SHISA3A0PJX4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
SHISA3A0PJX4 PP12613-201ENST00000424958 2230 ntBASIC16.39■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms