Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 THRAP3-203ENST00000469141 3339 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.112e-8■■□□□ 11.5
DDX55Q8NHQ9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.14■□□□□ 0.58e-6■■□□□ 11.5
DDX55Q8NHQ9 POR-211ENST00000439963 625 ntTSL 416.55■□□□□ 0.248e-6■■□□□ 11.5
DDX55Q8NHQ9 POR-217ENST00000460892 603 ntTSL 216.34■□□□□ 0.218e-6■■□□□ 11.5
DDX55Q8NHQ9 AL365181.3-201ENST00000605886 3222 ntBASIC15.6■□□□□ 0.098e-6■■□□□ 11.5
DDX55Q8NHQ9 PDIA3-202ENST00000434494 2107 ntTSL 216■□□□□ 0.154e-34■■□□□ 11.5
DDX55Q8NHQ9 PDIA3-201ENST00000300289 3727 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.54e-34■■□□□ 11.5
DDX55Q8NHQ9 PDIA3-206ENST00000497349 739 ntTSL 26.71□□□□□ -1.344e-34■■□□□ 11.5
DDX55Q8NHQ9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.552e-18■■□□□ 11.5
DDX55Q8NHQ9 APMAP-202ENST00000451442 2117 ntTSL 513.58□□□□□ -0.242e-18■■□□□ 11.5
DDX55Q8NHQ9 DCXR-213ENST00000580320 915 ntTSL 226.46■■□□□ 1.836e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-206ENST00000578273 877 ntTSL 526.09■■□□□ 1.776e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-207ENST00000578885 968 ntTSL 526.01■■□□□ 1.756e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.746e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-210ENST00000579334 1251 ntTSL 525.86■■□□□ 1.736e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-214ENST00000580750 1076 ntTSL 525.23■■□□□ 1.636e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-218ENST00000582900 676 ntTSL 324.75■■□□□ 1.556e-8■■□□□ 11.5
DDX55Q8NHQ9 DCXR-215ENST00000581584 766 ntTSL 324.13■■□□□ 1.456e-8■■□□□ 11.5
DDX55Q8NHQ9 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.314e-17■■□□□ 11.5
DDX55Q8NHQ9 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.184e-17■■□□□ 11.5
DDX55Q8NHQ9 QPRT-201ENST00000219771 913 ntTSL 222.4■■□□□ 1.187e-27■■□□□ 11.5
DDX55Q8NHQ9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.717e-9■■□□□ 11.5
DDX55Q8NHQ9 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.43■□□□□ 0.77e-27■■□□□ 11.5
DDX55Q8NHQ9 QPRT-204ENST00000564967 2199 nt14.03□□□□□ -0.167e-27■■□□□ 11.5
DDX55Q8NHQ9 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.725e-8■■□□□ 11.5
DDX55Q8NHQ9 NORAD-201ENST00000565493 5339 ntBASIC17.02■□□□□ 0.326e-10■■□□□ 11.4
DDX55Q8NHQ9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.022e-12■■□□□ 11.4
DDX55Q8NHQ9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.44■□□□□ 0.542e-12■■□□□ 11.4
DDX55Q8NHQ9 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.38■□□□□ 0.372e-12■■□□□ 11.4
DDX55Q8NHQ9 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC15.98■□□□□ 0.152e-12■■□□□ 11.4
DDX55Q8NHQ9 SBF1-205ENST00000470434 2139 ntTSL 520.28■□□□□ 0.841e-6■■□□□ 11.4
DDX55Q8NHQ9 SBF1-204ENST00000418590 1578 ntTSL 1 (best)18.38■□□□□ 0.531e-6■■□□□ 11.4
DDX55Q8NHQ9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.291e-6■■□□□ 11.4
DDX55Q8NHQ9 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.151e-6■■□□□ 11.4
DDX55Q8NHQ9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.712e-6■■□□□ 11.4
DDX55Q8NHQ9 NREP-201ENST00000257435 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.582e-6■■□□□ 11.4
DDX55Q8NHQ9 NREP-205ENST00000446294 2065 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.62e-6■■□□□ 11.4
DDX55Q8NHQ9 NREP-217ENST00000509025 987 ntTSL 3 BASIC8.53□□□□□ -1.042e-6■■□□□ 11.4
DDX55Q8NHQ9 NREP-222ENST00000514515 3564 ntTSL 1 (best)6.62□□□□□ -1.352e-6■■□□□ 11.4
DDX55Q8NHQ9 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.036e-15■■□□□ 11.4
DDX55Q8NHQ9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.398e-7■■□□□ 11.4
DDX55Q8NHQ9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.752e-7■■□□□ 11.4
DDX55Q8NHQ9 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.031e-29■■□□□ 11.4
DDX55Q8NHQ9 CD74-209ENST00000523208 767 ntTSL 513.75□□□□□ -0.211e-29■■□□□ 11.4
DDX55Q8NHQ9 COL27A1-203ENST00000468565 1946 ntTSL 217.7■□□□□ 0.425e-13■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.072e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.91■□□□□ 0.942e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.31■□□□□ 0.682e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18■□□□□ 0.472e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.68■□□□□ 0.422e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.52■□□□□ 0.42e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-220ENST00000542922 2174 ntTSL 214.73□□□□□ -0.052e-11■■□□□ 11.4
DDX55Q8NHQ9 SLC3A2-214ENST00000539507 534 ntTSL 38.49□□□□□ -1.052e-11■■□□□ 11.4
DDX55Q8NHQ9 RCC2-203ENST00000474892 783 ntTSL 317.8■□□□□ 0.442e-6■■□□□ 11.4
DDX55Q8NHQ9 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.38■■■■□ 3.098e-10■■□□□ 11.4
DDX55Q8NHQ9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.628e-10■■□□□ 11.4
DDX55Q8NHQ9 AP002990.1-201ENST00000526409 1954 ntTSL 520.45■□□□□ 0.864e-6■■□□□ 11.4
DDX55Q8NHQ9 AARS-207ENST00000569825 871 ntTSL 220.38■□□□□ 0.858e-10■■□□□ 11.4
DDX55Q8NHQ9 EEF1G-203ENST00000525340 2496 ntTSL 1 (best)16.33■□□□□ 0.24e-6■■□□□ 11.4
DDX55Q8NHQ9 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.134e-6■■□□□ 11.4
DDX55Q8NHQ9 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.096e-21■■□□□ 11.4
DDX55Q8NHQ9 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.094e-6■■□□□ 11.4
DDX55Q8NHQ9 AARS-203ENST00000565361 839 ntTSL 514.25□□□□□ -0.138e-10■■□□□ 11.4
DDX55Q8NHQ9 PFDN5-206ENST00000548984 541 ntTSL 212.56□□□□□ -0.41e-23■■□□□ 11.4
DDX55Q8NHQ9 PFDN5-213ENST00000550964 596 ntTSL 212.07□□□□□ -0.481e-23■■□□□ 11.4
DDX55Q8NHQ9 SSR2-205ENST00000472467 1833 ntTSL 210.51□□□□□ -0.733e-6■■□□□ 11.4
DDX55Q8NHQ9 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.784e-6■■□□□ 11.4
DDX55Q8NHQ9 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC10.17□□□□□ -0.784e-6■■□□□ 11.4
DDX55Q8NHQ9 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC9.09□□□□□ -0.954e-6■■□□□ 11.4
DDX55Q8NHQ9 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC8.85□□□□□ -0.994e-6■■□□□ 11.4
DDX55Q8NHQ9 UBQLN1-206ENST00000533705 6055 ntTSL 1 (best)6.89□□□□□ -1.316e-21■■□□□ 11.4
DDX55Q8NHQ9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.84■■□□□ 1.574e-26■■□□□ 11.4
DDX55Q8NHQ9 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.72■□□□□ 0.594e-26■■□□□ 11.4
DDX55Q8NHQ9 APOC3-201ENST00000227667 550 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.24e-26■■□□□ 11.4
DDX55Q8NHQ9 USP11-204ENST00000377107 3515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.268e-14■■□□□ 11.4
DDX55Q8NHQ9 USP11-206ENST00000469080 3467 ntTSL 1 (best)12.93□□□□□ -0.348e-14■■□□□ 11.4
DDX55Q8NHQ9 USP11-201ENST00000218348 3338 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.658e-14■■□□□ 11.4
DDX55Q8NHQ9 CHMP1A-206ENST00000549139 812 ntTSL 219.55■□□□□ 0.722e-12■■□□□ 11.4
DDX55Q8NHQ9 MAN2C1-235ENST00000567163 1356 ntTSL 526.54■■□□□ 1.841e-6■■□□□ 11.4
DDX55Q8NHQ9 MAN2C1-219ENST00000564570 803 ntTSL 526.22■■□□□ 1.791e-6■■□□□ 11.4
DDX55Q8NHQ9 MAN2C1-236ENST00000567360 457 ntTSL 224.02■■□□□ 1.441e-6■■□□□ 11.4
DDX55Q8NHQ9 MAN2C1-220ENST00000564785 4820 ntTSL 514.64□□□□□ -0.071e-6■■□□□ 11.4
DDX55Q8NHQ9 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC8.99□□□□□ -0.971e-6■■□□□ 11.4
DDX55Q8NHQ9 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.311e-6■■□□□ 11.4
DDX55Q8NHQ9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC27.98■■■□□ 2.072e-6■■□□□ 11.4
DDX55Q8NHQ9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC33.1■■■□□ 2.898e-7■■□□□ 11.4
DDX55Q8NHQ9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.38e-7■■□□□ 11.4
DDX55Q8NHQ9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.18■■■□□ 2.268e-7■■□□□ 11.4
DDX55Q8NHQ9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC26.48■■□□□ 1.838e-7■■□□□ 11.4
DDX55Q8NHQ9 ZFAND2B-214ENST00000464902 1851 ntTSL 225.78■■□□□ 1.728e-7■■□□□ 11.4
DDX55Q8NHQ9 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.678e-7■■□□□ 11.4
DDX55Q8NHQ9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.35■□□□□ 0.692e-14■■□□□ 11.4
DDX55Q8NHQ9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.62■□□□□ 0.572e-14■■□□□ 11.4
DDX55Q8NHQ9 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.332e-14■■□□□ 11.4
DDX55Q8NHQ9 APP-201ENST00000346798 3467 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.462e-14■■□□□ 11.4
DDX55Q8NHQ9 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.88□□□□□ -1.152e-14■■□□□ 11.4
DDX55Q8NHQ9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.463e-7■■□□□ 11.4
DDX55Q8NHQ9 LIME1-210ENST00000621325 2410 ntTSL 223.32■■□□□ 1.323e-7■■□□□ 11.4
DDX55Q8NHQ9 AL121845.2-202ENST00000476221 446 ntTSL 521.91■■□□□ 1.13e-7■■□□□ 11.4
DDX55Q8NHQ9 LIME1-209ENST00000494776 391 ntTSL 519.31■□□□□ 0.683e-7■■□□□ 11.4
Retrieved 100 of 15,504 protein–RNA pairs in 191.1 ms