Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 HLA-A-209ENST00000638375 975 ntBASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 AL023875.1-201ENST00000640777 796 ntBASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 AC009113.1-201ENST00000570267 2443 ntBASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 ESRRAP1-201ENST00000400596 1257 ntBASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 C1QL1P1-201ENST00000568105 661 ntBASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 AC004264.1-201ENST00000608354 794 ntBASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP4Q8N3C7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
CLIP4Q8N3C7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CLIP4Q8N3C7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CLIP4Q8N3C7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 FEM1AP3-201ENST00000403722 1741 ntBASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP4Q8N3C7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP4Q8N3C7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms