Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CCDC28AQ8IWP9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
CCDC28AQ8IWP9 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 PCDHB19P-201ENST00000570871 2371 ntBASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC28AQ8IWP9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 AL136162.1-201ENST00000607711 1078 ntBASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC28AQ8IWP9 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 TSPY26P-202ENST00000565928 3884 ntBASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 DOC2GP-204ENST00000639052 2548 ntBASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.74■□□□□ 0.11
CCDC28AQ8IWP9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms