Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VMP1Q96GC9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VMP1Q96GC9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.08■□□□□ 0.49
VMP1Q96GC9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
VMP1Q96GC9 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VMP1Q96GC9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.08■□□□□ 0.49
VMP1Q96GC9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VMP1Q96GC9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VMP1Q96GC9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
VMP1Q96GC9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VMP1Q96GC9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.08■□□□□ 0.49
VMP1Q96GC9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.08■□□□□ 0.49
VMP1Q96GC9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.08■□□□□ 0.49
VMP1Q96GC9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 NUDT16P1-203ENST00000513809 620 ntBASIC18.08■□□□□ 0.48
VMP1Q96GC9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 AL031985.4-201ENST00000642138 673 ntBASIC18.08■□□□□ 0.48
VMP1Q96GC9 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VMP1Q96GC9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.08■□□□□ 0.48
VMP1Q96GC9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VMP1Q96GC9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 AL032819.2-201ENST00000624543 2162 ntBASIC18.07■□□□□ 0.48
VMP1Q96GC9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 AP003071.4-201ENST00000562276 1284 ntBASIC18.07■□□□□ 0.48
VMP1Q96GC9 AC026271.3-201ENST00000571884 352 ntBASIC18.07■□□□□ 0.48
VMP1Q96GC9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 AC131212.4-201ENST00000623606 975 ntBASIC18.07■□□□□ 0.48
VMP1Q96GC9 HLA-A-209ENST00000638375 975 ntBASIC18.07■□□□□ 0.48
VMP1Q96GC9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
VMP1Q96GC9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VMP1Q96GC9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.06■□□□□ 0.48
VMP1Q96GC9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VMP1Q96GC9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.06■□□□□ 0.48
VMP1Q96GC9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms