Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CTHRC1Q96CG8 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CTHRC1Q96CG8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.52■□□□□ 0.39
CTHRC1Q96CG8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CTHRC1Q96CG8 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.52■□□□□ 0.39
CTHRC1Q96CG8 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 AC007663.1-201ENST00000438948 1240 ntBASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 NAPSB-206ENST00000562112 1266 ntBASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 MIR4674-201ENST00000582457 87 ntBASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 AC010653.2-201ENST00000623505 997 ntBASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.51■□□□□ 0.39
CTHRC1Q96CG8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 AP003041.3-201ENST00000527151 707 ntBASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 AC008556.1-201ENST00000610908 2040 ntBASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.5■□□□□ 0.39
CTHRC1Q96CG8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 ANO7L1-203ENST00000602586 1720 ntBASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 AL357033.4-201ENST00000617703 1807 ntBASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CTHRC1Q96CG8 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 INGX-201ENST00000359239 846 ntBASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 AC087499.1-201ENST00000418141 1075 ntBASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 MCCD1P1-208ENST00000445732 328 ntBASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CTHRC1Q96CG8 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 AC128688.1-201ENST00000487626 519 ntBASIC17.47■□□□□ 0.39
CTHRC1Q96CG8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms