Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SRRM2-213ENST00000573311 732 ntTSL 218.23■□□□□ 0.513e-13■■□□□ 11.5
DDX55Q8NHQ9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.59e-24■■□□□ 11.5
DDX55Q8NHQ9 STXBP2-214ENST00000599400 811 ntTSL 518.05■□□□□ 0.483e-6■■□□□ 11.5
DDX55Q8NHQ9 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.96■□□□□ 0.471e-7■■□□□ 11.5
DDX55Q8NHQ9 MCM2-206ENST00000474964 2847 ntTSL 217.9■□□□□ 0.465e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-209ENST00000599590 572 ntTSL 417.83■□□□□ 0.445e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC17.81■□□□□ 0.445e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.445e-6■■□□□ 11.5
DDX55Q8NHQ9 SEMA4C-203ENST00000449330 839 ntTSL 317.79■□□□□ 0.441e-7■■□□□ 11.5
DDX55Q8NHQ9 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.423e-7■■□□□ 11.5
DDX55Q8NHQ9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.425e-6■■□□□ 11.5
DDX55Q8NHQ9 TRIM11-206ENST00000602582 682 ntTSL 317.65■□□□□ 0.425e-6■■□□□ 11.5
DDX55Q8NHQ9 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■□□□ 11.5
DDX55Q8NHQ9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.415e-6■■□□□ 11.5
DDX55Q8NHQ9 FOXRED1-207ENST00000527004 1760 ntTSL 517.53■□□□□ 0.41e-7■■□□□ 11.5
DDX55Q8NHQ9 SHMT2-208ENST00000553868 941 ntTSL 217.42■□□□□ 0.385e-6■■□□□ 11.5
DDX55Q8NHQ9 SRRM2-210ENST00000572721 841 ntTSL 217.34■□□□□ 0.373e-13■■□□□ 11.5
DDX55Q8NHQ9 MIR6858-201ENST00000620733 67 ntBASIC17.27■□□□□ 0.361e-7■■□□□ 11.5
DDX55Q8NHQ9 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.355e-6■■□□□ 11.5
DDX55Q8NHQ9 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.341e-7■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.13■□□□□ 0.335e-6■■□□□ 11.5
DDX55Q8NHQ9 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.1■□□□□ 0.335e-6■■□□□ 11.5
DDX55Q8NHQ9 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.84■□□□□ 0.295e-6■■□□□ 11.5
DDX55Q8NHQ9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.76■□□□□ 0.275e-6■■□□□ 11.5
DDX55Q8NHQ9 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.74■□□□□ 0.275e-6■■□□□ 11.5
DDX55Q8NHQ9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.56■□□□□ 0.249e-7■■□□□ 11.5
DDX55Q8NHQ9 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.245e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-208ENST00000599302 636 ntTSL 316.48■□□□□ 0.235e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.235e-6■■□□□ 11.5
DDX55Q8NHQ9 IDH3G-207ENST00000454076 739 ntTSL 1 (best)16.27■□□□□ 0.25e-6■■□□□ 11.5
DDX55Q8NHQ9 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.195e-6■■□□□ 11.5
DDX55Q8NHQ9 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.2■□□□□ 0.185e-6■■□□□ 11.5
DDX55Q8NHQ9 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.18■□□□□ 0.185e-6■■□□□ 11.5
DDX55Q8NHQ9 R3HDM2-206ENST00000429355 2266 ntTSL 516.12■□□□□ 0.175e-6■■□□□ 11.5
DDX55Q8NHQ9 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.159e-7■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.63■□□□□ 0.095e-6■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.56■□□□□ 0.085e-6■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.085e-6■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC15.54■□□□□ 0.085e-6■■□□□ 11.5
DDX55Q8NHQ9 KXD1-212ENST00000600099 517 ntTSL 215.53■□□□□ 0.085e-6■■□□□ 11.5
DDX55Q8NHQ9 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.36■□□□□ 0.055e-6■■□□□ 11.5
DDX55Q8NHQ9 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.055e-6■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-201ENST00000326956 2913 ntTSL 215.21■□□□□ 0.035e-6■■□□□ 11.5
DDX55Q8NHQ9 AC073610.2-201ENST00000537495 406 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.035e-6■■□□□ 11.5
DDX55Q8NHQ9 PSME4-201ENST00000389993 6581 ntTSL 1 (best)15.18■□□□□ 0.025e-6■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-211ENST00000484496 2422 ntTSL 515.08■□□□□ 05e-6■■□□□ 11.5
DDX55Q8NHQ9 FOXRED1-218ENST00000534315 2210 ntTSL 1 (best)14.87□□□□□ -0.031e-7■■□□□ 11.5
DDX55Q8NHQ9 MCM2-202ENST00000468414 1076 ntTSL 214.86□□□□□ -0.035e-6■■□□□ 11.5
DDX55Q8NHQ9 IMPDH1-207ENST00000469328 2295 ntTSL 514.85□□□□□ -0.035e-6■■□□□ 11.5
DDX55Q8NHQ9 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC14.84□□□□□ -0.035e-6■■□□□ 11.5
DDX55Q8NHQ9 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.035e-6■■□□□ 11.5
DDX55Q8NHQ9 TMEM259-204ENST00000586285 626 ntTSL 314.61□□□□□ -0.075e-6■■□□□ 11.5
DDX55Q8NHQ9 VASP-206ENST00000588463 655 ntTSL 214.5□□□□□ -0.091e-9■■□□□ 11.5
DDX55Q8NHQ9 MED25-209ENST00000612791 881 ntTSL 5 BASIC14.47□□□□□ -0.091e-7■■□□□ 11.5
DDX55Q8NHQ9 FOXRED1-217ENST00000534011 1955 ntTSL 214.38□□□□□ -0.111e-7■■□□□ 11.5
DDX55Q8NHQ9 CETN3-203ENST00000522083 1026 ntTSL 2 BASIC14.33□□□□□ -0.125e-6■■□□□ 11.5
DDX55Q8NHQ9 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.135e-6■■□□□ 11.5
DDX55Q8NHQ9 VASP-207ENST00000588482 804 ntTSL 514.16□□□□□ -0.141e-9■■□□□ 11.5
DDX55Q8NHQ9 SH3BP1-206ENST00000469947 2612 ntTSL 214.06□□□□□ -0.165e-6■■□□□ 11.5
DDX55Q8NHQ9 HBA2-202ENST00000397806 513 ntTSL 2 BASIC13.98□□□□□ -0.174e-39■■□□□ 11.5
DDX55Q8NHQ9 CETN3-201ENST00000283122 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.185e-6■■□□□ 11.5
DDX55Q8NHQ9 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC13.81□□□□□ -0.25e-6■■□□□ 11.5
DDX55Q8NHQ9 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.255e-6■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-208ENST00000540977 389 ntTSL 213.5□□□□□ -0.255e-6■■□□□ 11.5
DDX55Q8NHQ9 ENSA-202ENST00000339643 633 ntTSL 2 BASIC13.05□□□□□ -0.321e-7■■□□□ 11.5
DDX55Q8NHQ9 KXD1-208ENST00000597438 635 ntTSL 313.03□□□□□ -0.325e-6■■□□□ 11.5
DDX55Q8NHQ9 SHMT2-218ENST00000555213 611 ntTSL 312.99□□□□□ -0.335e-6■■□□□ 11.5
DDX55Q8NHQ9 RFXANK-206ENST00000535017 546 ntTSL 312.9□□□□□ -0.345e-6■■□□□ 11.5
DDX55Q8NHQ9 TUBGCP2-201ENST00000252936 3885 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.365e-6■■□□□ 11.5
DDX55Q8NHQ9 SRRM2-211ENST00000572883 887 ntTSL 212.77□□□□□ -0.373e-13■■□□□ 11.5
DDX55Q8NHQ9 TUBGCP2-208ENST00000482278 3553 ntTSL 212.62□□□□□ -0.395e-6■■□□□ 11.5
DDX55Q8NHQ9 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.479e-7■■□□□ 11.5
DDX55Q8NHQ9 TPM4-216ENST00000592822 262 ntTSL 511.93□□□□□ -0.55e-6■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-215ENST00000533946 431 ntTSL 311.92□□□□□ -0.55e-6■■□□□ 11.5
DDX55Q8NHQ9 AGPAT4-203ENST00000366911 7705 ntTSL 1 (best) BASIC11.87□□□□□ -0.515e-6■■□□□ 11.5
DDX55Q8NHQ9 MED25-206ENST00000594998 3339 ntTSL 1 (best)11.7□□□□□ -0.541e-7■■□□□ 11.5
DDX55Q8NHQ9 VASP-209ENST00000590459 405 ntTSL 211.66□□□□□ -0.541e-9■■□□□ 11.5
DDX55Q8NHQ9 R3HDM2-205ENST00000403821 3347 ntTSL 5 BASIC11.58□□□□□ -0.565e-6■■□□□ 11.5
DDX55Q8NHQ9 ENSA-213ENST00000509582 716 ntTSL 311.55□□□□□ -0.561e-7■■□□□ 11.5
DDX55Q8NHQ9 LINC02193-203ENST00000568418 2056 ntTSL 5 BASIC11.41□□□□□ -0.585e-6■■□□□ 11.5
DDX55Q8NHQ9 AC073610.3-201ENST00000398092 939 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.675e-6■■□□□ 11.5
DDX55Q8NHQ9 SSBP3-212ENST00000528930 862 ntTSL 1 (best)10.65□□□□□ -0.75e-6■■□□□ 11.5
DDX55Q8NHQ9 AGPAT4-201ENST00000320285 7865 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.755e-6■■□□□ 11.5
DDX55Q8NHQ9 ENSA-215ENST00000638926 360 ntTSL 5 BASIC9.57□□□□□ -0.881e-7■■□□□ 11.5
DDX55Q8NHQ9 FOXRED1-210ENST00000530642 3045 ntTSL 29.14□□□□□ -0.951e-7■■□□□ 11.5
DDX55Q8NHQ9 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC9.03□□□□□ -0.961e-7■■□□□ 11.5
DDX55Q8NHQ9 PSMD4-210ENST00000470396 338 ntTSL 1 (best)8.3□□□□□ -1.081e-7■■□□□ 11.5
DDX55Q8NHQ9 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC8.15□□□□□ -1.11e-7■■□□□ 11.5
DDX55Q8NHQ9 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.76□□□□□ -1.171e-7■■□□□ 11.5
DDX55Q8NHQ9 CETN3-206ENST00000522864 738 ntTSL 3 BASIC7.4□□□□□ -1.225e-6■■□□□ 11.5
DDX55Q8NHQ9 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.238e-7■■□□□ 11.5
DDX55Q8NHQ9 ENSA-212ENST00000505321 552 ntTSL 57.31□□□□□ -1.241e-7■■□□□ 11.5
DDX55Q8NHQ9 SQLE-203ENST00000518931 554 ntTSL 46.97□□□□□ -1.295e-6■■□□□ 11.5
DDX55Q8NHQ9 PTPN12-209ENST00000460731 582 ntTSL 26.67□□□□□ -1.345e-6■■□□□ 11.5
DDX55Q8NHQ9 CETN3-202ENST00000518458 610 ntTSL 36.67□□□□□ -1.345e-6■■□□□ 11.5
DDX55Q8NHQ9 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.15□□□□□ -1.431e-7■■□□□ 11.5
DDX55Q8NHQ9 SQLE-202ENST00000518604 743 ntTSL 25.86□□□□□ -1.475e-6■■□□□ 11.5
DDX55Q8NHQ9 ENSA-203ENST00000354702 569 ntTSL 55.24□□□□□ -1.571e-7■■□□□ 11.5
DDX55Q8NHQ9 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.22□□□□□ -1.571e-7■■□□□ 11.5
DDX55Q8NHQ9 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.7□□□□□ -1.821e-7■■□□□ 11.5
Retrieved 100 of 15,504 protein–RNA pairs in 1169.1 ms