RNA–Protein interactions for RNA: ENST00000460731.5

PTPN12-209, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 2

Gene PTPN12, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-209ENST00000460731 AEBP2Q6ZN18 517 aaPredicted RBP26.33■■□□□ 1.81
PTPN12-209ENST00000460731 CHIC1Q5VXU3 224 aa24.72■■□□□ 1.55
PTPN12-209ENST00000460731 SENP3Q9H4L4 574 aaPredicted RBP22.44■■□□□ 1.18
PTPN12-209ENST00000460731 PHF23Q9BUL5 403 aaPredicted RBP22.12■■□□□ 1.13
PTPN12-209ENST00000460731 FOXD1Q16676 465 aa20.97■□□□□ 0.95
PTPN12-209ENST00000460731 MSH5O43196 834 aa19.69■□□□□ 0.74
PTPN12-209ENST00000460731 POTEDQ86YR6 584 aa19.69■□□□□ 0.74
PTPN12-209ENST00000460731 PLPPR3Q6T4P5 718 aa19.6■□□□□ 0.73
PTPN12-209ENST00000460731 PIAS4Q8N2W9 510 aaPredicted RBP19.46■□□□□ 0.71
PTPN12-209ENST00000460731 PPP6R1Q9UPN7 881 aa19.43■□□□□ 0.7
PTPN12-209ENST00000460731 ADRA2BP18089 450 aa19.3■□□□□ 0.68
PTPN12-209ENST00000460731 MAPK8IP2Q13387 824 aaPredicted RBP17.82■□□□□ 0.44
PTPN12-209ENST00000460731 DMRT2Q9Y5R5 561 aa17.79■□□□□ 0.44
PTPN12-209ENST00000460731 SCAF1Q9H7N4 1312 aaKnown RBP17.63■□□□□ 0.41
PTPN12-209ENST00000460731 PPP4R3CPQ6ZMV5 832 aa17.14■□□□□ 0.33
PTPN12-209ENST00000460731 HOXD11P31277 338 aaPredicted RBP17.05■□□□□ 0.32
PTPN12-209ENST00000460731 CACNB1Q02641 598 aaPredicted RBP17.01■□□□□ 0.31
PTPN12-209ENST00000460731 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
PTPN12-209ENST00000460731 CNKSR2Q8WXI2 1034 aa16.89■□□□□ 0.29
PTPN12-209ENST00000460731 RNF39Q9H2S5 420 aa16.83■□□□□ 0.28
PTPN12-209ENST00000460731 RNF216Q9NWF9 866 aaPredicted RBP16.82■□□□□ 0.28
PTPN12-209ENST00000460731 DNAJC5BQ9UF47 199 aa16.57■□□□□ 0.24
PTPN12-209ENST00000460731 C1QBPQ07021 282 aaKnown RBP16.54■□□□□ 0.24
PTPN12-209ENST00000460731 NCBP3Q53F19 620 aaKnown RBP16.37■□□□□ 0.21
PTPN12-209ENST00000460731 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
PTPN12-209ENST00000460731 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.13■□□□□ 0.17
PTPN12-209ENST00000460731 U3KPZ7 1027 aaPredicted RBP15.85■□□□□ 0.13
PTPN12-209ENST00000460731 SPINK5Q9NQ38 1064 aaPredicted RBP15.67■□□□□ 0.1
PTPN12-209ENST00000460731 DSG3P32926 999 aa15.66■□□□□ 0.1
PTPN12-209ENST00000460731 KCNA4P22459 653 aa15.64■□□□□ 0.09
PTPN12-209ENST00000460731 CAPN15O75808 1086 aa15.58■□□□□ 0.08
PTPN12-209ENST00000460731 SLC4A2P04920 1241 aa15.56■□□□□ 0.08
PTPN12-209ENST00000460731 POTEHQ6S545 545 aa15.35■□□□□ 0.05
PTPN12-209ENST00000460731 APLP2Q06481 763 aa15.29■□□□□ 0.04
PTPN12-209ENST00000460731 ZNF219Q9P2Y4 722 aaPredicted RBP15.29■□□□□ 0.04
PTPN12-209ENST00000460731 TRHP20396 242 aaPredicted RBP15.27■□□□□ 0.04
PTPN12-209ENST00000460731 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
PTPN12-209ENST00000460731 HNRNPUL2Q1KMD3 747 aaKnown RBP15.25■□□□□ 0.03
PTPN12-209ENST00000460731 ABCB7O75027 752 aa15.21■□□□□ 0.03
PTPN12-209ENST00000460731 SAMD1Q6SPF0 538 aaPredicted RBP15.17■□□□□ 0.02
PTPN12-209ENST00000460731 MYCNP04198 464 aaPredicted RBP14.95□□□□□ -0.02
PTPN12-209ENST00000460731 RBM42Q9BTD8 480 aaKnown RBP14.89□□□□□ -0.03
PTPN12-209ENST00000460731 POLA2Q14181 598 aa14.84□□□□□ -0.03
PTPN12-209ENST00000460731 CHRDL2Q6WN34 429 aa14.69□□□□□ -0.06
PTPN12-209ENST00000460731 SLC4A1APQ9BWU0 796 aaKnown RBP14.67□□□□□ -0.06
PTPN12-209ENST00000460731 FOXD4L1Q9NU39 408 aa14.66□□□□□ -0.06
PTPN12-209ENST00000460731 ATF5Q9Y2D1 282 aaPredicted RBP14.66□□□□□ -0.06
PTPN12-209ENST00000460731 AKT1S1Q96B36 256 aa14.53□□□□□ -0.08
PTPN12-209ENST00000460731 ZBTB12Q9Y330 459 aaPredicted RBP14.53□□□□□ -0.08
PTPN12-209ENST00000460731 ZBTB22O15209 634 aa14.41□□□□□ -0.1
PTPN12-209ENST00000460731 REM2Q8IYK8 340 aaPredicted RBP14.39□□□□□ -0.11
PTPN12-209ENST00000460731 OSCARQ8IYS5 282 aa14.38□□□□□ -0.11
PTPN12-209ENST00000460731 PIP4P2Q8N4L2 257 aa14.3□□□□□ -0.12
PTPN12-209ENST00000460731 ATXN8OSP0DMR3 200 aa14.28□□□□□ -0.12
PTPN12-209ENST00000460731 SP7Q8TDD2 431 aaPredicted RBP14.27□□□□□ -0.13
PTPN12-209ENST00000460731 PITPNM1O00562 1244 aa14.23□□□□□ -0.13
PTPN12-209ENST00000460731 FXR2P51116 673 aaKnown RBP eCLIP14.2□□□□□ -0.14
PTPN12-209ENST00000460731 SPDYE2BA6NHP3 402 aa14.08□□□□□ -0.16
PTPN12-209ENST00000460731 SPDYE6P0CI01 402 aa14.08□□□□□ -0.16
PTPN12-209ENST00000460731 SPDYE2Q495Y8 402 aa14.08□□□□□ -0.16
PTPN12-209ENST00000460731 HAX1O00165 279 aa14.04□□□□□ -0.16
PTPN12-209ENST00000460731 FBLN2P98095 1184 aa14.02□□□□□ -0.17
PTPN12-209ENST00000460731 MKRN4PQ13434 485 aaPredicted RBP13.99□□□□□ -0.17
PTPN12-209ENST00000460731 EVX2Q03828 476 aa13.94□□□□□ -0.18
PTPN12-209ENST00000460731 SSUH2Q9Y2M2 353 aa13.91□□□□□ -0.18
PTPN12-209ENST00000460731 SPDYE1Q8NFV5 336 aaPredicted RBP13.88□□□□□ -0.19
PTPN12-209ENST00000460731 PRKAR2AP13861 404 aaKnown RBP13.83□□□□□ -0.2
PTPN12-209ENST00000460731 ZNF692Q9BU19 519 aaPredicted RBP13.83□□□□□ -0.2
PTPN12-209ENST00000460731 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
PTPN12-209ENST00000460731 C19orf67A6NJJ6 358 aa13.75□□□□□ -0.21
PTPN12-209ENST00000460731 PABPN1Q86U42 306 aaKnown RBP eCLIP13.62□□□□□ -0.23
PTPN12-209ENST00000460731 CHADLQ6NUI6 762 aa13.61□□□□□ -0.23
PTPN12-209ENST00000460731 GABBR2O75899 941 aa13.58□□□□□ -0.24
PTPN12-209ENST00000460731 PRR29P0C7W0 189 aa13.57□□□□□ -0.24
PTPN12-209ENST00000460731 CSRNP3Q8WYN3 585 aa13.5□□□□□ -0.25
PTPN12-209ENST00000460731 FARP1Q9Y4F1 1045 aaPredicted RBP13.42□□□□□ -0.26
PTPN12-209ENST00000460731 NISCHQ9Y2I1 1504 aa13.42□□□□□ -0.26
PTPN12-209ENST00000460731 CD44P16070 742 aaKnown RBP13.37□□□□□ -0.27
PTPN12-209ENST00000460731 LHX8Q68G74 356 aa13.37□□□□□ -0.27
PTPN12-209ENST00000460731 POTEIP0CG38 1075 aa13.34□□□□□ -0.27
PTPN12-209ENST00000460731 CLCN6P51797 869 aa13.3□□□□□ -0.28
PTPN12-209ENST00000460731 CREBZFQ9NS37 354 aa13.24□□□□□ -0.29
PTPN12-209ENST00000460731 ZNF579Q8NAF0 562 aaKnown RBP13.21□□□□□ -0.29
PTPN12-209ENST00000460731 STAG3Q9UJ98 1225 aa13.2□□□□□ -0.3
PTPN12-209ENST00000460731 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
PTPN12-209ENST00000460731 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
PTPN12-209ENST00000460731 DCBLD2Q96PD2 775 aa13.09□□□□□ -0.31
PTPN12-209ENST00000460731 EHMT2Q96KQ7 1210 aa13.06□□□□□ -0.32
PTPN12-209ENST00000460731 GALR2O43603 387 aaPredicted RBP13.04□□□□□ -0.32
PTPN12-209ENST00000460731 MNX1P50219 401 aaPredicted RBP13.03□□□□□ -0.32
PTPN12-209ENST00000460731 PHF12Q96QT6 1004 aa12.95□□□□□ -0.34
PTPN12-209ENST00000460731 PAK3O75914 559 aaPredicted RBP12.93□□□□□ -0.34
PTPN12-209ENST00000460731 NPM1P06748 294 aaKnown RBP eCLIP12.92□□□□□ -0.34
PTPN12-209ENST00000460731 PROM2Q8N271 834 aa12.89□□□□□ -0.35
PTPN12-209ENST00000460731 POTEB2H3BUK9 544 aa12.88□□□□□ -0.35
PTPN12-209ENST00000460731 OTUD5Q96G74 571 aa12.88□□□□□ -0.35
PTPN12-209ENST00000460731 PELP1Q8IZL8 1130 aaKnown RBP12.85□□□□□ -0.35
PTPN12-209ENST00000460731 ASTLQ6HA08 431 aaPredicted RBP12.79□□□□□ -0.36
PTPN12-209ENST00000460731 MS4A3Q96HJ5 214 aa12.78□□□□□ -0.36
PTPN12-209ENST00000460731 ATMINO43313 823 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms