RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 AEBP2Q6ZN18 517 aaPredicted RBP27.78■■■□□ 2.04
SSBP3-212ENST00000528930 CHIC1Q5VXU3 224 aa26.03■■□□□ 1.76
SSBP3-212ENST00000528930 SENP3Q9H4L4 574 aaPredicted RBP23.61■■□□□ 1.37
SSBP3-212ENST00000528930 PHF23Q9BUL5 403 aaPredicted RBP23.35■■□□□ 1.33
SSBP3-212ENST00000528930 FOXD1Q16676 465 aa22.14■■□□□ 1.13
SSBP3-212ENST00000528930 NISCHQ9Y2I1 1504 aa21.68■■□□□ 1.06
SSBP3-212ENST00000528930 ABCC9O60706 1549 aa20.96■□□□□ 0.95
SSBP3-212ENST00000528930 POTEDQ86YR6 584 aa20.77■□□□□ 0.92
SSBP3-212ENST00000528930 MSH5O43196 834 aa20.69■□□□□ 0.9
SSBP3-212ENST00000528930 PLPPR3Q6T4P5 718 aa20.64■□□□□ 0.89
SSBP3-212ENST00000528930 DNAJC5BQ9UF47 199 aa20.63■□□□□ 0.89
SSBP3-212ENST00000528930 PIAS4Q8N2W9 510 aaPredicted RBP20.61■□□□□ 0.89
SSBP3-212ENST00000528930 PPP6R1Q9UPN7 881 aa20.55■□□□□ 0.88
SSBP3-212ENST00000528930 ADRA2BP18089 450 aa20.48■□□□□ 0.87
SSBP3-212ENST00000528930 CCDC180Q9P1Z9 1646 aa20.13■□□□□ 0.81
SSBP3-212ENST00000528930 DNAJC5Q9H3Z4 198 aa19.78■□□□□ 0.76
SSBP3-212ENST00000528930 RB1CC1Q8TDY2 1594 aa19.57■□□□□ 0.72
SSBP3-212ENST00000528930 UNC13AQ9UPW8 1703 aa19.31■□□□□ 0.68
SSBP3-212ENST00000528930 PABPN1Q86U42 306 aaKnown RBP eCLIP19.2■□□□□ 0.66
SSBP3-212ENST00000528930 NACADO15069 1562 aa19.18■□□□□ 0.66
SSBP3-212ENST00000528930 BICRAQ9NZM4 1560 aa19.11■□□□□ 0.65
SSBP3-212ENST00000528930 CECR2Q9BXF3 1484 aa19.03■□□□□ 0.64
SSBP3-212ENST00000528930 CC2D2AQ9P2K1 1620 aa19■□□□□ 0.63
SSBP3-212ENST00000528930 MAPK8IP2Q13387 824 aaPredicted RBP18.92■□□□□ 0.62
SSBP3-212ENST00000528930 SHROOM4Q9ULL8 1493 aa18.75■□□□□ 0.59
SSBP3-212ENST00000528930 DMRT2Q9Y5R5 561 aa18.7■□□□□ 0.58
SSBP3-212ENST00000528930 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
SSBP3-212ENST00000528930 CUX2O14529 1486 aa18.63■□□□□ 0.57
SSBP3-212ENST00000528930 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
SSBP3-212ENST00000528930 SCAF1Q9H7N4 1312 aaKnown RBP18.57■□□□□ 0.56
SSBP3-212ENST00000528930 DCAF8L2P0C7V8 631 aa18.42■□□□□ 0.54
SSBP3-212ENST00000528930 TRIM41Q8WV44 630 aa18.3■□□□□ 0.52
SSBP3-212ENST00000528930 ERCC6Q03468 1493 aa18.14■□□□□ 0.5
SSBP3-212ENST00000528930 PPP4R3CPQ6ZMV5 832 aa18.13■□□□□ 0.49
SSBP3-212ENST00000528930 SCRIBQ14160 1630 aa18.09■□□□□ 0.49
SSBP3-212ENST00000528930 DCAF8L1A6NGE4 600 aa18.08■□□□□ 0.48
SSBP3-212ENST00000528930 CACNB1Q02641 598 aaPredicted RBP18.03■□□□□ 0.48
SSBP3-212ENST00000528930 THOC2Q8NI27 1593 aaKnown RBP17.92■□□□□ 0.46
SSBP3-212ENST00000528930 DCAF1Q9Y4B6 1507 aa17.92■□□□□ 0.46
SSBP3-212ENST00000528930 HOXD11P31277 338 aaPredicted RBP17.88■□□□□ 0.45
SSBP3-212ENST00000528930 CNKSR2Q8WXI2 1034 aa17.79■□□□□ 0.44
SSBP3-212ENST00000528930 ZCCHC6Q5VYS8 1495 aaKnown RBP17.76■□□□□ 0.43
SSBP3-212ENST00000528930 NESP48681 1621 aa17.72■□□□□ 0.43
SSBP3-212ENST00000528930 RNF39Q9H2S5 420 aa17.68■□□□□ 0.42
SSBP3-212ENST00000528930 RNF216Q9NWF9 866 aaPredicted RBP17.68■□□□□ 0.42
SSBP3-212ENST00000528930 NCAPD3P42695 1498 aa17.67■□□□□ 0.42
SSBP3-212ENST00000528930 BAZ1AQ9NRL2 1556 aaPredicted RBP17.63■□□□□ 0.41
SSBP3-212ENST00000528930 KIF21AQ7Z4S6 1674 aa17.6■□□□□ 0.41
SSBP3-212ENST00000528930 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
SSBP3-212ENST00000528930 RIMBP3CA6NJZ7 1639 aa17.51■□□□□ 0.39
SSBP3-212ENST00000528930 RIMBP3BA6NNM3 1639 aa17.51■□□□□ 0.39
SSBP3-212ENST00000528930 RIMBP3Q9UFD9 1639 aa17.51■□□□□ 0.39
SSBP3-212ENST00000528930 HMGXB3Q12766 1538 aa17.51■□□□□ 0.39
SSBP3-212ENST00000528930 LAMC3Q9Y6N6 1575 aa17.5■□□□□ 0.39
SSBP3-212ENST00000528930 ATAD2BQ9ULI0 1458 aa17.44■□□□□ 0.38
SSBP3-212ENST00000528930 OSCARQ8IYS5 282 aa17.39■□□□□ 0.37
SSBP3-212ENST00000528930 WDR62O43379 1518 aa17.37■□□□□ 0.37
SSBP3-212ENST00000528930 C1QBPQ07021 282 aaKnown RBP17.36■□□□□ 0.37
SSBP3-212ENST00000528930 PDS5BQ9NTI5 1447 aa17.31■□□□□ 0.36
SSBP3-212ENST00000528930 ARHGEF11O15085 1522 aa17.3■□□□□ 0.36
SSBP3-212ENST00000528930 MRC2Q9UBG0 1479 aa17.3■□□□□ 0.36
SSBP3-212ENST00000528930 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.36
SSBP3-212ENST00000528930 SMARCA4P51532 1647 aa17.21■□□□□ 0.35
SSBP3-212ENST00000528930 BAZ1BQ9UIG0 1483 aaKnown RBP17.18■□□□□ 0.34
SSBP3-212ENST00000528930 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
SSBP3-212ENST00000528930 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.12■□□□□ 0.33
SSBP3-212ENST00000528930 NPM3O75607 178 aaKnown RBP17.11■□□□□ 0.33
SSBP3-212ENST00000528930 PEG3Q9GZU2 1588 aa17.11■□□□□ 0.33
SSBP3-212ENST00000528930 ILDR1Q86SU0 546 aaPredicted RBP17.05■□□□□ 0.32
SSBP3-212ENST00000528930 ARAP1Q96P48 1450 aa17.05■□□□□ 0.32
SSBP3-212ENST00000528930 CYB5RLQ6IPT4 315 aa17.02■□□□□ 0.32
SSBP3-212ENST00000528930 CADPSQ9ULU8 1353 aa17■□□□□ 0.31
SSBP3-212ENST00000528930 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
SSBP3-212ENST00000528930 CHD1O14646 1710 aa16.85■□□□□ 0.29
SSBP3-212ENST00000528930 FANCD2Q9BXW9 1451 aa16.84■□□□□ 0.29
SSBP3-212ENST00000528930 RSF1Q96T23 1441 aaPredicted RBP16.83■□□□□ 0.28
SSBP3-212ENST00000528930 URB2Q14146 1524 aaKnown RBP16.82■□□□□ 0.28
SSBP3-212ENST00000528930 ZNF608Q9ULD9 1512 aaPredicted RBP16.76■□□□□ 0.27
SSBP3-212ENST00000528930 U3KPZ7 1027 aaPredicted RBP16.73■□□□□ 0.27
SSBP3-212ENST00000528930 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
SSBP3-212ENST00000528930 IFT140Q96RY7 1462 aa16.68■□□□□ 0.26
SSBP3-212ENST00000528930 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
SSBP3-212ENST00000528930 CFTRP13569 1480 aa16.64■□□□□ 0.25
SSBP3-212ENST00000528930 SPINK5Q9NQ38 1064 aaPredicted RBP16.63■□□□□ 0.25
SSBP3-212ENST00000528930 PRDM2Q13029 1718 aa16.62■□□□□ 0.25
SSBP3-212ENST00000528930 CLASP1Q7Z460 1538 aa16.6■□□□□ 0.25
SSBP3-212ENST00000528930 KCNA4P22459 653 aa16.59■□□□□ 0.25
SSBP3-212ENST00000528930 CAPN15O75808 1086 aa16.58■□□□□ 0.24
SSBP3-212ENST00000528930 KIF13AQ9H1H9 1805 aa16.53■□□□□ 0.24
SSBP3-212ENST00000528930 DSG3P32926 999 aa16.5■□□□□ 0.23
SSBP3-212ENST00000528930 WIZO95785 1651 aa16.46■□□□□ 0.23
SSBP3-212ENST00000528930 TARBP1Q13395 1621 aaKnown RBP16.46■□□□□ 0.23
SSBP3-212ENST00000528930 TOPBP1Q92547 1522 aa16.44■□□□□ 0.22
SSBP3-212ENST00000528930 ERCC6L2Q5T890 1561 aa16.43■□□□□ 0.22
SSBP3-212ENST00000528930 KDM4FA0A1W2PPD8 638 aa16.43■□□□□ 0.22
SSBP3-212ENST00000528930 SLC4A2P04920 1241 aa16.42■□□□□ 0.22
SSBP3-212ENST00000528930 SYNJ1O43426 1573 aa16.42■□□□□ 0.22
SSBP3-212ENST00000528930 AQRO60306 1485 aaKnown RBP eCLIP16.4■□□□□ 0.222e-7■■■■■ 51.6
SSBP3-212ENST00000528930 GAPVD1Q14C86 1478 aa16.39■□□□□ 0.21
SSBP3-212ENST00000528930 FBLN2P98095 1184 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms