Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.19■■□□□ 1.143e-7■■□□□ 14
YBX3P16989 TAF7-202ENST00000624699 517 ntTSL 38.88□□□□□ -0.993e-7■■□□□ 14
YBX3P16989 PPP2CA-202ENST00000472253 574 ntTSL 29.05□□□□□ -0.961e-8■■□□□ 14
YBX3P16989 HIST1H4H-201ENST00000377727 397 ntAPPRIS P1 BASIC11.42□□□□□ -0.582e-19■■□□□ 14
YBX3P16989 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.714e-8■■□□□ 14
YBX3P16989 PCGF1-204ENST00000475863 1056 ntTSL 1 (best)17.28■□□□□ 0.364e-8■■□□□ 14
YBX3P16989 PCGF1-205ENST00000480844 718 ntTSL 510.42□□□□□ -0.744e-8■■□□□ 14
YBX3P16989 PCGF1-203ENST00000465993 587 ntTSL 38.81□□□□□ -14e-8■■□□□ 14
YBX3P16989 POP7-202ENST00000457480 483 ntTSL 319.95■□□□□ 0.786e-10■■□□□ 14
YBX3P16989 TMED2-202ENST00000438031 603 ntTSL 436.08■■■■□ 3.374e-7■■□□□ 14
YBX3P16989 TMED2-205ENST00000544188 433 ntTSL 215.32■□□□□ 0.044e-7■■□□□ 14
YBX3P16989 NDUFA4-204ENST00000482299 606 ntTSL 27□□□□□ -1.293e-7■■□□□ 14
YBX3P16989 THRAP3-203ENST00000469141 3339 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.036e-11■■□□□ 14
YBX3P16989 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.556e-11■■□□□ 14
YBX3P16989 EPAS1-208ENST00000468530 452 ntTSL 515.69■□□□□ 0.11e-6■■□□□ 14
YBX3P16989 EPAS1-206ENST00000466465 3622 ntTSL 210.2□□□□□ -0.781e-6■■□□□ 14
YBX3P16989 ERBB3-218ENST00000551176 277 ntTSL 1 (best)10.05□□□□□ -0.86e-9■■□□□ 14
YBX3P16989 ERBB3-204ENST00000546748 574 ntTSL 28.49□□□□□ -1.056e-9■■□□□ 14
YBX3P16989 DCTN2-214ENST00000550086 384 ntTSL 59.53□□□□□ -0.882e-6■■□□□ 14
YBX3P16989 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.88■■□□□ 1.734e-7■■□□□ 14
YBX3P16989 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.79■□□□□ 0.924e-7■■□□□ 14
YBX3P16989 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.9■□□□□ 0.624e-7■■□□□ 14
YBX3P16989 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.064e-7■■□□□ 14
YBX3P16989 MRPS2-206ENST00000472946 495 ntTSL 210.91□□□□□ -0.662e-7■■□□□ 14
YBX3P16989 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC10.71□□□□□ -0.71e-6■■□□□ 14
YBX3P16989 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.131e-6■■□□□ 14
YBX3P16989 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.161e-6■■□□□ 14
YBX3P16989 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.722e-7■■□□□ 14
YBX3P16989 PRKAG1-201ENST00000316299 1683 ntTSL 2 BASIC15.33■□□□□ 0.042e-7■■□□□ 14
YBX3P16989 PRKAG1-202ENST00000546531 1679 ntTSL 515.24■□□□□ 0.032e-7■■□□□ 14
YBX3P16989 PRKAG1-205ENST00000547306 1531 ntTSL 5 BASIC12.72□□□□□ -0.372e-7■■□□□ 14
YBX3P16989 QARS-219ENST00000482468 402 ntTSL 27.32□□□□□ -1.242e-11■■□□□ 14
YBX3P16989 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.692e-6■■□□□ 14
YBX3P16989 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.642e-6■■□□□ 14
YBX3P16989 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.422e-6■■□□□ 14
YBX3P16989 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.042e-6■■□□□ 14
YBX3P16989 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.322e-7■■□□□ 14
YBX3P16989 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.012e-7■■□□□ 14
YBX3P16989 PPP1CB-201ENST00000296122 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.072e-7■■□□□ 14
YBX3P16989 SPDYA-205ENST00000462832 2081 ntTSL 25.52□□□□□ -1.532e-7■■□□□ 14
YBX3P16989 PDE4DIP-237ENST00000585156 8439 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.543e-7■■□□□ 14
YBX3P16989 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.643e-7■■□□□ 14
YBX3P16989 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.13e-7■■□□□ 14
YBX3P16989 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC8.04□□□□□ -1.123e-7■■□□□ 14
YBX3P16989 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.82□□□□□ -1.163e-7■■□□□ 14
YBX3P16989 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.66□□□□□ -1.183e-7■■□□□ 14
YBX3P16989 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.57□□□□□ -1.23e-7■■□□□ 14
YBX3P16989 CHID1-211ENST00000528154 594 ntTSL 417.47■□□□□ 0.392e-10■■□□□ 14
YBX3P16989 CHID1-209ENST00000525840 438 ntTSL 311.97□□□□□ -0.492e-10■■□□□ 14
YBX3P16989 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.195e-37■■□□□ 14
YBX3P16989 HMGA1-206ENST00000478214 716 ntTSL 1 (best)20.3■□□□□ 0.845e-37■■□□□ 14
YBX3P16989 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.785e-37■■□□□ 14
YBX3P16989 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.735e-37■■□□□ 14
YBX3P16989 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.315e-37■■□□□ 14
YBX3P16989 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.751e-6■■□□□ 14
YBX3P16989 UBL4A-206ENST00000481237 340 ntTSL 433.02■■■□□ 2.887e-14■■□□□ 14
YBX3P16989 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.75□□□□□ -2.137e-14■■□□□ 14
YBX3P16989 SRSF8-202ENST00000638426 560 ntTSL 210.25□□□□□ -0.772e-7■■□□□ 14
YBX3P16989 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.322e-6■■□□□ 14
YBX3P16989 ARIH2-227ENST00000490095 1001 ntTSL 523.63■■□□□ 1.372e-6■■□□□ 13.9
YBX3P16989 ARIH2-230ENST00000495761 569 ntTSL 323.23■■□□□ 1.312e-6■■□□□ 13.9
YBX3P16989 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.65■□□□□ 0.97e-7■■□□□ 13.9
YBX3P16989 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.67e-7■■□□□ 13.9
YBX3P16989 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.462e-6■■□□□ 13.9
YBX3P16989 SLC25A19-214ENST00000583332 693 ntTSL 516.21■□□□□ 0.197e-7■■□□□ 13.9
YBX3P16989 SLC25A19-204ENST00000416858 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.157e-7■■□□□ 13.9
YBX3P16989 SLC25A19-201ENST00000320362 1651 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.077e-7■■□□□ 13.9
YBX3P16989 ARIH2-212ENST00000465217 588 ntTSL 514.3□□□□□ -0.122e-6■■□□□ 13.9
YBX3P16989 SLC25A19-210ENST00000580994 1554 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.167e-7■■□□□ 13.9
YBX3P16989 SLC25A19-203ENST00000402418 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.427e-7■■□□□ 13.9
YBX3P16989 ARIH2-201ENST00000356401 4933 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.682e-6■■□□□ 13.9
YBX3P16989 ARIH2-207ENST00000452385 2778 ntTSL 29.6□□□□□ -0.872e-6■■□□□ 13.9
YBX3P16989 SLC25A19-213ENST00000582822 448 ntTSL 35.84□□□□□ -1.477e-7■■□□□ 13.9
YBX3P16989 BCOR-206ENST00000406200 4216 ntTSL 29.85□□□□□ -0.834e-7■■□□□ 13.9
YBX3P16989 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.16e-7■■□□□ 13.9
YBX3P16989 ELF4-204ENST00000615377 3878 ntTSL 5 BASIC9.7□□□□□ -0.866e-7■■□□□ 13.9
YBX3P16989 ELF4-202ENST00000335997 4145 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.946e-7■■□□□ 13.9
YBX3P16989 MACF1-207ENST00000442046 2299 ntTSL 515.54■□□□□ 0.083e-8■■□□□ 13.9
YBX3P16989 MACF1-208ENST00000446276 2559 ntTSL 514.36□□□□□ -0.113e-8■■□□□ 13.9
YBX3P16989 MACF1-225ENST00000497807 2689 ntTSL 1 (best)11.98□□□□□ -0.493e-8■■□□□ 13.9
YBX3P16989 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.645e-9■■□□□ 13.9
YBX3P16989 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.04■□□□□ 0.645e-9■■□□□ 13.9
YBX3P16989 KIAA0368-206ENST00000602978 539 ntAPPRIS ALT2 TSL 426.38■■□□□ 1.818e-10■■□□□ 13.9
YBX3P16989 KIAA0368-205ENST00000602447 2806 ntAPPRIS ALT2 TSL 518.45■□□□□ 0.548e-10■■□□□ 13.9
YBX3P16989 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.098e-10■■□□□ 13.9
YBX3P16989 KIAA0368-202ENST00000338205 7078 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.498e-10■■□□□ 13.9
YBX3P16989 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.34e-7■■□□□ 13.9
YBX3P16989 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.66□□□□□ -1.344e-7■■□□□ 13.9
YBX3P16989 CMC2-214ENST00000565925 640 ntTSL 5 BASIC19.03■□□□□ 0.646e-9■■□□□ 13.9
YBX3P16989 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.24■□□□□ 0.356e-9■■□□□ 13.9
YBX3P16989 CMC2-207ENST00000564174 424 ntTSL 3 BASIC12.75□□□□□ -0.376e-9■■□□□ 13.9
YBX3P16989 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.593e-8■■□□□ 13.9
YBX3P16989 UBA52-203ENST00000594527 357 ntTSL 39.6□□□□□ -0.878e-56■■□□□ 13.9
YBX3P16989 SERPINF1-208ENST00000572517 672 ntTSL 215.28■□□□□ 0.043e-10■■□□□ 13.9
YBX3P16989 LRRC41-204ENST00000496156 892 ntTSL 514.89□□□□□ -0.035e-8■■□□□ 13.9
YBX3P16989 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.25e-7■■□□□ 13.9
YBX3P16989 ALDH1A2-207ENST00000558231 1664 ntTSL 2 BASIC12.56□□□□□ -0.44e-8■■□□□ 13.9
YBX3P16989 CTSB-225ENST00000532409 839 ntTSL 220.46■□□□□ 0.871e-9■■□□□ 13.9
YBX3P16989 CTSB-218ENST00000530624 430 ntTSL 518.94■□□□□ 0.621e-9■■□□□ 13.9
YBX3P16989 CTSB-227ENST00000533110 399 ntTSL 513.45□□□□□ -0.261e-9■■□□□ 13.9
Retrieved 100 of 29,075 protein–RNA pairs in 494.9 ms