Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PCNAP12004 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.4■□□□□ 0.54
PCNAP12004 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 PRORSD1P-201ENST00000295112 541 ntBASIC18.4■□□□□ 0.54
PCNAP12004 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.4■□□□□ 0.54
PCNAP12004 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.4■□□□□ 0.54
PCNAP12004 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.4■□□□□ 0.54
PCNAP12004 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 FP475955.4-201ENST00000623131 1990 ntBASIC18.4■□□□□ 0.54
PCNAP12004 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.4■□□□□ 0.54
PCNAP12004 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PCNAP12004 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCNAP12004 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.4■□□□□ 0.54
PCNAP12004 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.39■□□□□ 0.54
PCNAP12004 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.39■□□□□ 0.54
PCNAP12004 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCNAP12004 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
PCNAP12004 AC104581.1-202ENST00000635932 2618 ntBASIC18.39■□□□□ 0.54
PCNAP12004 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCNAP12004 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PCNAP12004 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
PCNAP12004 NIFKP9-201ENST00000419265 221 ntBASIC18.39■□□□□ 0.53
PCNAP12004 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
PCNAP12004 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 RPS2P4-201ENST00000476944 856 ntBASIC18.39■□□□□ 0.53
PCNAP12004 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 AC142381.4-202ENST00000563973 229 ntBASIC18.39■□□□□ 0.53
PCNAP12004 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 AC131212.4-201ENST00000623606 975 ntBASIC18.39■□□□□ 0.53
PCNAP12004 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.39■□□□□ 0.53
PCNAP12004 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
PCNAP12004 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.39■□□□□ 0.53
PCNAP12004 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 AL138781.2-201ENST00000617896 1843 ntBASIC18.39■□□□□ 0.53
PCNAP12004 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCNAP12004 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.39■□□□□ 0.53
PCNAP12004 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.38■□□□□ 0.53
PCNAP12004 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PCNAP12004 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.38■□□□□ 0.53
PCNAP12004 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 AC005082.1-201ENST00000413042 2259 ntBASIC18.38■□□□□ 0.53
PCNAP12004 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.38■□□□□ 0.53
PCNAP12004 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.38■□□□□ 0.53
PCNAP12004 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.38■□□□□ 0.53
PCNAP12004 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCNAP12004 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.38■□□□□ 0.53
PCNAP12004 AL158047.1-201ENST00000445918 881 ntBASIC18.38■□□□□ 0.53
PCNAP12004 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
PCNAP12004 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.38■□□□□ 0.53
PCNAP12004 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.38■□□□□ 0.53
PCNAP12004 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.38■□□□□ 0.53
PCNAP12004 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms