Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 KRT17P3-201ENST00000420566 1262 ntBASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
TRAV3A0A0B4J244 AC026471.1-201ENST00000564629 3026 ntBASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 BICD1-207ENST00000551848 1962 ntBASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 AC026366.1-201ENST00000488803 879 ntBASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV3A0A0B4J244 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 AC005332.8-201ENST00000622750 2735 ntBASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 KRASP1-201ENST00000407852 552 ntBASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 AC126763.1-201ENST00000552015 2118 ntBASIC15.21■□□□□ 0.03
TRAV3A0A0B4J244 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms