Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC15.25■□□□□ 0.03
HMGB3O15347 AL031963.3-201ENST00000606441 850 ntBASIC15.25■□□□□ 0.03
HMGB3O15347 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC15.25■□□□□ 0.03
HMGB3O15347 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HMGB3O15347 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HMGB3O15347 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HMGB3O15347 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HMGB3O15347 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 NOC2LP1-202ENST00000452600 2235 ntBASIC15.24■□□□□ 0.03
HMGB3O15347 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 CD44-222ENST00000526025 1052 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB3O15347 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB3O15347 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB3O15347 CD276-201ENST00000318424 2738 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB3O15347 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HMGB3O15347 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 AL354751.1-201ENST00000412768 1863 ntBASIC15.24■□□□□ 0.03
HMGB3O15347 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HMGB3O15347 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 KRT8P20-201ENST00000423953 1409 ntBASIC15.24■□□□□ 0.03
HMGB3O15347 AC141586.3-201ENST00000562166 1838 ntBASIC15.24■□□□□ 0.03
HMGB3O15347 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGB3O15347 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 BICD1-207ENST00000551848 1962 ntBASIC15.24■□□□□ 0.03
HMGB3O15347 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.24■□□□□ 0.03
HMGB3O15347 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
HMGB3O15347 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGB3O15347 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
HMGB3O15347 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HMGB3O15347 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HMGB3O15347 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 NME4-202ENST00000382940 766 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGB3O15347 MIR939-201ENST00000401314 82 ntBASIC15.23■□□□□ 0.03
HMGB3O15347 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC15.23■□□□□ 0.03
HMGB3O15347 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGB3O15347 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 NME4-211ENST00000620944 1193 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 AL031598.1-201ENST00000561511 1773 ntBASIC15.23■□□□□ 0.03
HMGB3O15347 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC15.23■□□□□ 0.03
HMGB3O15347 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
HMGB3O15347 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGB3O15347 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGB3O15347 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGB3O15347 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.22■□□□□ 0.03
HMGB3O15347 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 AC067852.2-201ENST00000590513 2313 ntBASIC15.22■□□□□ 0.03
HMGB3O15347 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGB3O15347 PHGDH-210ENST00000641115 1638 ntBASIC15.22■□□□□ 0.03
HMGB3O15347 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGB3O15347 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.22■□□□□ 0.03
HMGB3O15347 NOC2LP2-201ENST00000407594 1944 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms