Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.4■□□□□ 0.54
UBFD1O14562 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
UBFD1O14562 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
UBFD1O14562 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
UBFD1O14562 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.39■□□□□ 0.54
UBFD1O14562 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.39■□□□□ 0.53
UBFD1O14562 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
UBFD1O14562 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.39■□□□□ 0.53
UBFD1O14562 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
UBFD1O14562 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 AC026366.1-201ENST00000488803 879 ntBASIC18.39■□□□□ 0.53
UBFD1O14562 RNA5SP413-201ENST00000516373 109 ntBASIC18.39■□□□□ 0.53
UBFD1O14562 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.39■□□□□ 0.53
UBFD1O14562 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.39■□□□□ 0.53
UBFD1O14562 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.39■□□□□ 0.53
UBFD1O14562 AL023875.1-201ENST00000640777 796 ntBASIC18.39■□□□□ 0.53
UBFD1O14562 LETM1P2-201ENST00000597330 2178 ntBASIC18.39■□□□□ 0.53
UBFD1O14562 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 NOC2LP1-202ENST00000452600 2235 ntBASIC18.39■□□□□ 0.53
UBFD1O14562 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.39■□□□□ 0.53
UBFD1O14562 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
UBFD1O14562 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
UBFD1O14562 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 RCC2P6-201ENST00000526625 1557 ntBASIC18.38■□□□□ 0.53
UBFD1O14562 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.38■□□□□ 0.53
UBFD1O14562 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 AL499627.1-201ENST00000569373 2188 ntBASIC18.38■□□□□ 0.53
UBFD1O14562 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.38■□□□□ 0.53
UBFD1O14562 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
UBFD1O14562 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.38■□□□□ 0.53
UBFD1O14562 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
UBFD1O14562 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
UBFD1O14562 POU5F1P3-201ENST00000428824 1078 ntBASIC18.38■□□□□ 0.53
UBFD1O14562 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.38■□□□□ 0.53
UBFD1O14562 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
UBFD1O14562 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.38■□□□□ 0.53
UBFD1O14562 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.38■□□□□ 0.53
UBFD1O14562 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
UBFD1O14562 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
UBFD1O14562 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
UBFD1O14562 HEIH-201ENST00000623091 1652 ntBASIC18.38■□□□□ 0.53
UBFD1O14562 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.37■□□□□ 0.53
UBFD1O14562 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 AC073592.3-201ENST00000625118 1834 ntBASIC18.37■□□□□ 0.53
UBFD1O14562 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
UBFD1O14562 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.37■□□□□ 0.53
UBFD1O14562 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.37■□□□□ 0.53
UBFD1O14562 KRT17P3-201ENST00000420566 1262 ntBASIC18.37■□□□□ 0.53
UBFD1O14562 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
UBFD1O14562 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.37■□□□□ 0.53
UBFD1O14562 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.37■□□□□ 0.53
UBFD1O14562 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.37■□□□□ 0.53
UBFD1O14562 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
UBFD1O14562 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
UBFD1O14562 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms