Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 KRT17P3-201ENST00000420566 1262 ntBASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 AC233263.1-201ENST00000578059 224 ntBASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 AC069544.1-201ENST00000609399 999 ntBASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 MTDHP1-201ENST00000605323 784 ntBASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 AC007613.1-201ENST00000572811 2597 ntBASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.48■□□□□ 0.39
CPSF4LA6NMK7 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CPSF4LA6NMK7 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 TSPY21P-201ENST00000433481 731 ntBASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 AC026366.1-201ENST00000488803 879 ntBASIC17.46■□□□□ 0.39
CPSF4LA6NMK7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms