Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 AL138781.2-201ENST00000617896 1843 ntBASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 KRT8P41-201ENST00000533985 1514 ntBASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 BCL2-203ENST00000589955 5011 ntBASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC40Q4G0X9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC40Q4G0X9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 HTR7P1-201ENST00000538670 1336 ntBASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 AP002982.1-201ENST00000492365 877 ntBASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 Z85996.1-201ENST00000494644 937 ntBASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 AL445675.2-201ENST00000620291 557 ntBASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC40Q4G0X9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms