Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 KRT8P41-201ENST00000533985 1514 ntBASIC16.97■□□□□ 0.31
VSX1Q9NZR4 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 AC124016.1-201ENST00000609552 612 ntBASIC16.97■□□□□ 0.31
VSX1Q9NZR4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VSX1Q9NZR4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 RN7SL471P-201ENST00000580476 299 ntBASIC16.96■□□□□ 0.31
VSX1Q9NZR4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 AC083906.6-201ENST00000641366 219 ntBASIC16.96■□□□□ 0.31
VSX1Q9NZR4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VSX1Q9NZR4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VSX1Q9NZR4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 AL512353.2-201ENST00000448759 1962 ntBASIC16.95■□□□□ 0.3
VSX1Q9NZR4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 Z85996.1-201ENST00000494644 937 ntBASIC16.95■□□□□ 0.3
VSX1Q9NZR4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 AC110285.5-201ENST00000611501 352 ntBASIC16.95■□□□□ 0.3
VSX1Q9NZR4 AL445675.2-201ENST00000620291 557 ntBASIC16.95■□□□□ 0.3
VSX1Q9NZR4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VSX1Q9NZR4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms