Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.48■□□□□ 0.39
COPS4Q9BT78 AL137784.2-201ENST00000607332 1000 ntBASIC17.48■□□□□ 0.39
COPS4Q9BT78 AC080038.1-201ENST00000611274 1154 ntBASIC17.48■□□□□ 0.39
COPS4Q9BT78 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COPS4Q9BT78 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
COPS4Q9BT78 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 IKBKGP1-201ENST00000612193 1073 ntBASIC17.47■□□□□ 0.39
COPS4Q9BT78 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COPS4Q9BT78 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COPS4Q9BT78 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 MIR935-201ENST00000401179 91 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 AL512625.2-201ENST00000417533 625 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 C2orf69P4-201ENST00000565394 541 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 AC092437.1-201ENST00000624794 1048 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 AC073111.5-205ENST00000641717 521 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 IRX1P1-201ENST00000438849 1838 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COPS4Q9BT78 KRT17P1-201ENST00000399211 1546 ntBASIC17.46■□□□□ 0.39
COPS4Q9BT78 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.46■□□□□ 0.39
COPS4Q9BT78 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 ZNF815P-204ENST00000434898 1737 ntBASIC17.45■□□□□ 0.38
COPS4Q9BT78 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 LSM12P1-201ENST00000411836 588 ntBASIC17.45■□□□□ 0.38
COPS4Q9BT78 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COPS4Q9BT78 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.45■□□□□ 0.38
COPS4Q9BT78 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.44■□□□□ 0.38
COPS4Q9BT78 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.44■□□□□ 0.38
COPS4Q9BT78 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
COPS4Q9BT78 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.44■□□□□ 0.38
COPS4Q9BT78 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.44■□□□□ 0.38
COPS4Q9BT78 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COPS4Q9BT78 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COPS4Q9BT78 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms