Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH13P55290 AL031598.1-201ENST00000561511 1773 ntBASIC18.67■□□□□ 0.58
CDH13P55290 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH13P55290 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CDH13P55290 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH13P55290 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH13P55290 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH13P55290 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CDH13P55290 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH13P55290 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH13P55290 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH13P55290 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CDH13P55290 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.66■□□□□ 0.58
CDH13P55290 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 UNC93B5-201ENST00000530315 699 ntBASIC18.66■□□□□ 0.58
CDH13P55290 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.66■□□□□ 0.58
CDH13P55290 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.66■□□□□ 0.58
CDH13P55290 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 AC008403.3-201ENST00000598924 454 ntBASIC18.66■□□□□ 0.58
CDH13P55290 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CDH13P55290 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH13P55290 WIZP1-201ENST00000531444 2299 ntBASIC18.66■□□□□ 0.58
CDH13P55290 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH13P55290 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CDH13P55290 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH13P55290 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CDH13P55290 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH13P55290 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH13P55290 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.65■□□□□ 0.58
CDH13P55290 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH13P55290 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.65■□□□□ 0.58
CDH13P55290 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CDH13P55290 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH13P55290 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH13P55290 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CDH13P55290 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH13P55290 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
CDH13P55290 AL512353.2-201ENST00000448759 1962 ntBASIC18.64■□□□□ 0.58
CDH13P55290 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CDH13P55290 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CDH13P55290 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 HLA-L-209ENST00000420110 1011 ntBASIC18.64■□□□□ 0.57
CDH13P55290 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.64■□□□□ 0.57
CDH13P55290 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.64■□□□□ 0.57
CDH13P55290 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.64■□□□□ 0.57
CDH13P55290 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.64■□□□□ 0.57
CDH13P55290 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.64■□□□□ 0.57
CDH13P55290 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.64■□□□□ 0.57
CDH13P55290 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CDH13P55290 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CDH13P55290 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CDH13P55290 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms