Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.99■□□□□ 0.79
LIG3P49916 RPPH1-201ENST00000516869 333 ntBASIC19.99■□□□□ 0.79
LIG3P49916 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
LIG3P49916 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.99■□□□□ 0.79
LIG3P49916 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.99■□□□□ 0.79
LIG3P49916 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
LIG3P49916 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.99■□□□□ 0.79
LIG3P49916 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
LIG3P49916 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LIG3P49916 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
LIG3P49916 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.99■□□□□ 0.79
LIG3P49916 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.99■□□□□ 0.79
LIG3P49916 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.98■□□□□ 0.79
LIG3P49916 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.98■□□□□ 0.79
LIG3P49916 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
LIG3P49916 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 AC124283.5-201ENST00000624661 1809 ntBASIC19.98■□□□□ 0.79
LIG3P49916 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LIG3P49916 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.98■□□□□ 0.79
LIG3P49916 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.98■□□□□ 0.79
LIG3P49916 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 MTDHP1-201ENST00000605323 784 ntBASIC19.98■□□□□ 0.79
LIG3P49916 AL359736.2-201ENST00000621992 437 ntBASIC19.98■□□□□ 0.79
LIG3P49916 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.98■□□□□ 0.79
LIG3P49916 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LIG3P49916 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
LIG3P49916 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.98■□□□□ 0.79
LIG3P49916 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.98■□□□□ 0.79
LIG3P49916 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIG3P49916 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.97■□□□□ 0.79
LIG3P49916 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.97■□□□□ 0.79
LIG3P49916 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.97■□□□□ 0.79
LIG3P49916 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.97■□□□□ 0.79
LIG3P49916 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
LIG3P49916 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.97■□□□□ 0.79
LIG3P49916 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.97■□□□□ 0.79
LIG3P49916 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.97■□□□□ 0.79
LIG3P49916 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.97■□□□□ 0.79
LIG3P49916 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.97■□□□□ 0.79
LIG3P49916 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
LIG3P49916 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIG3P49916 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
LIG3P49916 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
LIG3P49916 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.96■□□□□ 0.79
LIG3P49916 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.96■□□□□ 0.79
LIG3P49916 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.96■□□□□ 0.79
LIG3P49916 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
LIG3P49916 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.96■□□□□ 0.79
LIG3P49916 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.96■□□□□ 0.79
LIG3P49916 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 AC139713.2-201ENST00000641328 2723 ntBASIC19.96■□□□□ 0.79
LIG3P49916 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIG3P49916 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
LIG3P49916 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.95■□□□□ 0.78
LIG3P49916 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
LIG3P49916 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 AC135050.7-201ENST00000624508 2218 ntBASIC19.95■□□□□ 0.78
LIG3P49916 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.95■□□□□ 0.78
LIG3P49916 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
LIG3P49916 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIG3P49916 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.95■□□□□ 0.78
LIG3P49916 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 428.6 ms