Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
NKX3-1Q99801 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NKX3-1Q99801 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 TSPY6P-201ENST00000448518 926 ntBASIC16.65■□□□□ 0.26
NKX3-1Q99801 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 AC133552.2-202ENST00000575694 574 ntBASIC16.65■□□□□ 0.26
NKX3-1Q99801 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NKX3-1Q99801 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.65■□□□□ 0.26
NKX3-1Q99801 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.64■□□□□ 0.26
NKX3-1Q99801 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
NKX3-1Q99801 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 EMC9-206ENST00000560403 872 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NKX3-1Q99801 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
NKX3-1Q99801 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 AC090340.1-201ENST00000620778 4980 ntBASIC16.63■□□□□ 0.25
NKX3-1Q99801 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 DUSP5P2-201ENST00000426873 1033 ntBASIC16.63■□□□□ 0.25
NKX3-1Q99801 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 AC104417.2-201ENST00000562989 1793 ntBASIC16.63■□□□□ 0.25
NKX3-1Q99801 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NKX3-1Q99801 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.63■□□□□ 0.25
NKX3-1Q99801 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms