Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 IRX1P1-201ENST00000438849 1838 ntBASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AL353807.1-201ENST00000427475 662 ntBASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AL353708.3-201ENST00000610272 989 ntBASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AC131212.4-201ENST00000623606 975 ntBASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC116Q8IYX3 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 GCSHP5-201ENST00000443090 522 ntBASIC18■□□□□ 0.47
CCDC116Q8IYX3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 RARRES2P10-201ENST00000564312 460 ntBASIC18■□□□□ 0.47
CCDC116Q8IYX3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18■□□□□ 0.47
CCDC116Q8IYX3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC116Q8IYX3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 TNXA-203ENST00000507684 2038 ntBASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 KRT8P41-201ENST00000533985 1514 ntBASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 AC004980.1-204ENST00000429707 299 ntBASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 KSR1P1-201ENST00000446298 240 ntBASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 AF186192.3-201ENST00000583427 947 ntBASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 CR392000.1-201ENST00000624770 1228 ntBASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC116Q8IYX3 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms