Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
LINC00643Q86TS7 ABR-203ENST00000536794 2213 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 TK2-221ENST00000620035 5060 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC11.96□□□□□ -0.49
LINC00643Q86TS7 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 GOLGA2P11-201ENST00000562660 1621 ntBASIC11.96□□□□□ -0.5
LINC00643Q86TS7 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00643Q86TS7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 REST-206ENST00000612429 1376 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 REST-207ENST00000616975 1370 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 PCDHA1-201ENST00000378133 2726 ntBASIC11.95□□□□□ -0.5
LINC00643Q86TS7 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 AL121761.2-201ENST00000598007 1648 ntBASIC11.95□□□□□ -0.5
LINC00643Q86TS7 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 AC009237.14-201ENST00000609975 1594 ntBASIC11.95□□□□□ -0.5
LINC00643Q86TS7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 GNE-204ENST00000539208 2190 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00643Q86TS7 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 USP39-202ENST00000409025 1946 ntTSL 5 BASIC11.94□□□□□ -0.5
LINC00643Q86TS7 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms