Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC40Q4G0X9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 KRASP1-201ENST00000407852 552 ntBASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
CCDC40Q4G0X9 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CCDC40Q4G0X9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
CCDC40Q4G0X9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC40Q4G0X9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC40Q4G0X9 IRX1P1-201ENST00000438849 1838 ntBASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 HLA-A-209ENST00000638375 975 ntBASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CCDC40Q4G0X9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 FP475955.4-201ENST00000623131 1990 ntBASIC21■□□□□ 0.95
CCDC40Q4G0X9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 AL160286.2-201ENST00000567150 934 ntBASIC21■□□□□ 0.95
CCDC40Q4G0X9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC40Q4G0X9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC40Q4G0X9 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms