Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC17.12■□□□□ 0.33
RAB40BQ12829 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RAB40BQ12829 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
RAB40BQ12829 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.12■□□□□ 0.33
RAB40BQ12829 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RAB40BQ12829 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.11■□□□□ 0.33
RAB40BQ12829 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RAB40BQ12829 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RAB40BQ12829 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 AC016769.1-201ENST00000409132 1010 ntBASIC17.11■□□□□ 0.33
RAB40BQ12829 LSM12P1-201ENST00000411836 588 ntBASIC17.11■□□□□ 0.33
RAB40BQ12829 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.11■□□□□ 0.33
RAB40BQ12829 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.11■□□□□ 0.33
RAB40BQ12829 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 AC011767.1-201ENST00000617410 1153 ntBASIC17.11■□□□□ 0.33
RAB40BQ12829 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.11■□□□□ 0.33
RAB40BQ12829 AC073592.3-201ENST00000625118 1834 ntBASIC17.11■□□□□ 0.33
RAB40BQ12829 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.11■□□□□ 0.33
RAB40BQ12829 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.11■□□□□ 0.33
RAB40BQ12829 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RAB40BQ12829 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
RAB40BQ12829 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.1■□□□□ 0.33
RAB40BQ12829 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RAB40BQ12829 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RAB40BQ12829 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.1■□□□□ 0.33
RAB40BQ12829 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RAB40BQ12829 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RAB40BQ12829 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RAB40BQ12829 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RAB40BQ12829 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RAB40BQ12829 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.1■□□□□ 0.33
RAB40BQ12829 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
RAB40BQ12829 ZNRF2P3-201ENST00000424200 374 ntBASIC17.1■□□□□ 0.33
RAB40BQ12829 AC007322.1-201ENST00000426983 750 ntBASIC17.1■□□□□ 0.33
RAB40BQ12829 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms