Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LINC00477Q96M19 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LINC00477Q96M19 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.93■□□□□ 0.62
LINC00477Q96M19 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LINC00477Q96M19 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC18.93■□□□□ 0.62
LINC00477Q96M19 AC135983.2-203ENST00000454486 1613 ntBASIC18.92■□□□□ 0.62
LINC00477Q96M19 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC18.92■□□□□ 0.62
LINC00477Q96M19 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC18.92■□□□□ 0.62
LINC00477Q96M19 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LINC00477Q96M19 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LINC00477Q96M19 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LINC00477Q96M19 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC18.92■□□□□ 0.62
LINC00477Q96M19 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LINC00477Q96M19 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LINC00477Q96M19 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LINC00477Q96M19 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LINC00477Q96M19 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LINC00477Q96M19 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LINC00477Q96M19 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC18.91■□□□□ 0.62
LINC00477Q96M19 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LINC00477Q96M19 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LINC00477Q96M19 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.91■□□□□ 0.62
LINC00477Q96M19 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LINC00477Q96M19 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC18.9■□□□□ 0.62
LINC00477Q96M19 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.9■□□□□ 0.62
LINC00477Q96M19 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LINC00477Q96M19 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LINC00477Q96M19 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
LINC00477Q96M19 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LINC00477Q96M19 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LINC00477Q96M19 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LINC00477Q96M19 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LINC00477Q96M19 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LINC00477Q96M19 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LINC00477Q96M19 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LINC00477Q96M19 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LINC00477Q96M19 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LINC00477Q96M19 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LINC00477Q96M19 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
LINC00477Q96M19 MIR3665-201ENST00000578708 105 ntBASIC18.87■□□□□ 0.61
LINC00477Q96M19 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LINC00477Q96M19 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LINC00477Q96M19 LINC00273-201ENST00000539813 1452 ntBASIC18.86■□□□□ 0.61
LINC00477Q96M19 AC018358.1-201ENST00000631079 1402 ntBASIC18.86■□□□□ 0.61
LINC00477Q96M19 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.85■□□□□ 0.61
LINC00477Q96M19 MIR6090-201ENST00000622481 60 ntBASIC18.85■□□□□ 0.61
LINC00477Q96M19 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LINC00477Q96M19 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LINC00477Q96M19 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC18.84■□□□□ 0.61
LINC00477Q96M19 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LINC00477Q96M19 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LINC00477Q96M19 WHAMMP2-203ENST00000563942 1603 ntBASIC18.84■□□□□ 0.61
LINC00477Q96M19 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
LINC00477Q96M19 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
LINC00477Q96M19 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
LINC00477Q96M19 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LINC00477Q96M19 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC18.83■□□□□ 0.6
LINC00477Q96M19 DUX4L28-201ENST00000623687 678 ntBASIC18.83■□□□□ 0.6
LINC00477Q96M19 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC18.82■□□□□ 0.6
LINC00477Q96M19 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LINC00477Q96M19 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LINC00477Q96M19 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LINC00477Q96M19 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LINC00477Q96M19 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LINC00477Q96M19 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LINC00477Q96M19 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LINC00477Q96M19 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LINC00477Q96M19 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LINC00477Q96M19 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LINC00477Q96M19 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.8■□□□□ 0.6
LINC00477Q96M19 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC18.8■□□□□ 0.6
LINC00477Q96M19 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
LINC00477Q96M19 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC00477Q96M19 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LINC00477Q96M19 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC18.79■□□□□ 0.6
LINC00477Q96M19 AP006261.1-201ENST00000584783 668 ntBASIC18.79■□□□□ 0.6
LINC00477Q96M19 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC00477Q96M19 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC00477Q96M19 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LINC00477Q96M19 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LINC00477Q96M19 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC18.78■□□□□ 0.6
LINC00477Q96M19 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.78■□□□□ 0.6
LINC00477Q96M19 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.78■□□□□ 0.6
LINC00477Q96M19 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LINC00477Q96M19 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LINC00477Q96M19 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC18.78■□□□□ 0.6
LINC00477Q96M19 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC18.77■□□□□ 0.6
LINC00477Q96M19 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC18.77■□□□□ 0.6
LINC00477Q96M19 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LINC00477Q96M19 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LINC00477Q96M19 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LINC00477Q96M19 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms