Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
KRT40Q6A162 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
KRT40Q6A162 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.49■■■□□ 2.31
KRT40Q6A162 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
KRT40Q6A162 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
KRT40Q6A162 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
KRT40Q6A162 AC021231.2-201ENST00000594613 730 ntBASIC29.48■■■□□ 2.31
KRT40Q6A162 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
KRT40Q6A162 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
KRT40Q6A162 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
KRT40Q6A162 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
KRT40Q6A162 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.46■■■□□ 2.31
KRT40Q6A162 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
KRT40Q6A162 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
KRT40Q6A162 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.31
KRT40Q6A162 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
KRT40Q6A162 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.45■■■□□ 2.3
KRT40Q6A162 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.44■■■□□ 2.3
KRT40Q6A162 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
KRT40Q6A162 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
KRT40Q6A162 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.42■■■□□ 2.3
KRT40Q6A162 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
KRT40Q6A162 DUX4L29-201ENST00000425409 679 ntBASIC29.42■■■□□ 2.3
KRT40Q6A162 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
KRT40Q6A162 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
KRT40Q6A162 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
KRT40Q6A162 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
KRT40Q6A162 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
KRT40Q6A162 MIR639-201ENST00000384974 98 ntBASIC29.41■■■□□ 2.3
KRT40Q6A162 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.41■■■□□ 2.3
KRT40Q6A162 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.41■■■□□ 2.3
KRT40Q6A162 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
KRT40Q6A162 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.4■■■□□ 2.3
KRT40Q6A162 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
KRT40Q6A162 AP002414.2-202ENST00000590929 1450 ntBASIC29.4■■■□□ 2.3
KRT40Q6A162 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
KRT40Q6A162 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
KRT40Q6A162 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
KRT40Q6A162 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.38■■■□□ 2.29
KRT40Q6A162 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.38■■■□□ 2.29
KRT40Q6A162 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.38■■■□□ 2.29
KRT40Q6A162 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.38■■■□□ 2.29
KRT40Q6A162 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.38■■■□□ 2.29
KRT40Q6A162 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
KRT40Q6A162 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
KRT40Q6A162 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
KRT40Q6A162 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
KRT40Q6A162 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT40Q6A162 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC29.35■■■□□ 2.29
KRT40Q6A162 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT40Q6A162 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
KRT40Q6A162 HSD17B1P1-201ENST00000590052 955 ntBASIC29.34■■■□□ 2.29
KRT40Q6A162 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
KRT40Q6A162 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
KRT40Q6A162 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC29.32■■■□□ 2.28
KRT40Q6A162 BX255925.1-201ENST00000566954 1854 ntBASIC29.32■■■□□ 2.28
KRT40Q6A162 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
KRT40Q6A162 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.32■■■□□ 2.28
KRT40Q6A162 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.32■■■□□ 2.28
KRT40Q6A162 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
KRT40Q6A162 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
KRT40Q6A162 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC29.31■■■□□ 2.28
KRT40Q6A162 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.31■■■□□ 2.28
KRT40Q6A162 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
KRT40Q6A162 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC29.3■■■□□ 2.28
KRT40Q6A162 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.3■■■□□ 2.28
KRT40Q6A162 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
KRT40Q6A162 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.3■■■□□ 2.28
KRT40Q6A162 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
KRT40Q6A162 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
KRT40Q6A162 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.29■■■□□ 2.28
KRT40Q6A162 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
KRT40Q6A162 LINC01003-201ENST00000564834 1764 ntBASIC29.29■■■□□ 2.28
KRT40Q6A162 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
KRT40Q6A162 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.28■■■□□ 2.28
KRT40Q6A162 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC29.28■■■□□ 2.28
KRT40Q6A162 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
KRT40Q6A162 AC016575.1-201ENST00000607026 382 ntBASIC29.27■■■□□ 2.28
KRT40Q6A162 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.27■■■□□ 2.28
KRT40Q6A162 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
KRT40Q6A162 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.28
KRT40Q6A162 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
KRT40Q6A162 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
KRT40Q6A162 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
KRT40Q6A162 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
KRT40Q6A162 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.25■■■□□ 2.27
KRT40Q6A162 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
KRT40Q6A162 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.23■■■□□ 2.27
KRT40Q6A162 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
KRT40Q6A162 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
KRT40Q6A162 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
KRT40Q6A162 MIR3648-2-201ENST00000581792 180 ntBASIC29.22■■■□□ 2.27
KRT40Q6A162 MIR3648-1-201ENST00000615959 180 ntBASIC29.22■■■□□ 2.27
KRT40Q6A162 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.21■■■□□ 2.27
KRT40Q6A162 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.21■■■□□ 2.27
KRT40Q6A162 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
KRT40Q6A162 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
KRT40Q6A162 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
KRT40Q6A162 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
KRT40Q6A162 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms