Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SNCAP37840 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.64■□□□□ 0.89
SNCAP37840 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNCAP37840 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNCAP37840 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SNCAP37840 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNCAP37840 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.61■□□□□ 0.89
SNCAP37840 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SNCAP37840 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SNCAP37840 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SNCAP37840 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.6■□□□□ 0.89
SNCAP37840 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.6■□□□□ 0.89
SNCAP37840 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SNCAP37840 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.59■□□□□ 0.89
SNCAP37840 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.59■□□□□ 0.89
SNCAP37840 EBPL-202ENST00000378268 680 ntTSL 3 BASIC20.59■□□□□ 0.89
SNCAP37840 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SNCAP37840 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC20.58■□□□□ 0.89
SNCAP37840 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.58■□□□□ 0.89
SNCAP37840 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SNCAP37840 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.57■□□□□ 0.88
SNCAP37840 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNCAP37840 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNCAP37840 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.57■□□□□ 0.88
SNCAP37840 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
SNCAP37840 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SNCAP37840 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.57■□□□□ 0.88
SNCAP37840 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.57■□□□□ 0.88
SNCAP37840 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SNCAP37840 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNCAP37840 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SNCAP37840 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNCAP37840 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SNCAP37840 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNCAP37840 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SNCAP37840 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.55■□□□□ 0.88
SNCAP37840 AL391121.1-201ENST00000607967 1349 ntBASIC20.54■□□□□ 0.88
SNCAP37840 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SNCAP37840 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.54■□□□□ 0.88
SNCAP37840 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SNCAP37840 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNCAP37840 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNCAP37840 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SNCAP37840 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.54■□□□□ 0.88
SNCAP37840 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SNCAP37840 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.53■□□□□ 0.88
SNCAP37840 AP004833.2-201ENST00000532228 1454 ntBASIC20.53■□□□□ 0.88
SNCAP37840 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
SNCAP37840 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SNCAP37840 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SNCAP37840 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.52■□□□□ 0.88
SNCAP37840 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNCAP37840 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNCAP37840 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SNCAP37840 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SNCAP37840 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.51■□□□□ 0.87
SNCAP37840 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.51■□□□□ 0.87
SNCAP37840 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNCAP37840 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNCAP37840 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNCAP37840 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SNCAP37840 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNCAP37840 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SNCAP37840 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SNCAP37840 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SNCAP37840 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SNCAP37840 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.5■□□□□ 0.87
SNCAP37840 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SNCAP37840 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
SNCAP37840 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNCAP37840 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNCAP37840 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SNCAP37840 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNCAP37840 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNCAP37840 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SNCAP37840 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.49■□□□□ 0.87
SNCAP37840 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.49■□□□□ 0.87
SNCAP37840 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNCAP37840 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNCAP37840 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SNCAP37840 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SNCAP37840 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNCAP37840 AC097358.2-201ENST00000607541 1159 ntBASIC20.48■□□□□ 0.87
SNCAP37840 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SNCAP37840 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SNCAP37840 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNCAP37840 AC093323.1-202ENST00000635031 2045 ntBASIC20.47■□□□□ 0.87
SNCAP37840 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SNCAP37840 AC020928.2-201ENST00000588717 2197 ntBASIC20.46■□□□□ 0.87
SNCAP37840 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.46■□□□□ 0.87
SNCAP37840 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNCAP37840 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
SNCAP37840 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SNCAP37840 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms