Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
USH2AO75445 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
USH2AO75445 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
USH2AO75445 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC11.7□□□□□ -0.54
USH2AO75445 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
USH2AO75445 AC007029.1-201ENST00000604183 313 ntBASIC11.69□□□□□ -0.54
USH2AO75445 MED25-210ENST00000612854 801 ntTSL 5 BASIC11.69□□□□□ -0.54
USH2AO75445 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
USH2AO75445 MED25-214ENST00000622402 642 ntTSL 5 BASIC11.69□□□□□ -0.54
USH2AO75445 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC11.69□□□□□ -0.54
USH2AO75445 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
USH2AO75445 MIR638-201ENST00000385237 100 ntBASIC11.69□□□□□ -0.54
USH2AO75445 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
USH2AO75445 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC11.69□□□□□ -0.54
USH2AO75445 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC11.69□□□□□ -0.54
USH2AO75445 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
USH2AO75445 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC11.69□□□□□ -0.54
USH2AO75445 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
USH2AO75445 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC11.69□□□□□ -0.54
USH2AO75445 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
USH2AO75445 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC11.68□□□□□ -0.54
USH2AO75445 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
USH2AO75445 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
USH2AO75445 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 RALB-208ENST00000631312 311 ntTSL 5 BASIC11.68□□□□□ -0.54
USH2AO75445 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
USH2AO75445 AL157400.5-201ENST00000507624 621 ntBASIC11.68□□□□□ -0.54
USH2AO75445 BHLHE23-202ENST00000612929 1109 ntBASIC11.68□□□□□ -0.54
USH2AO75445 AC010980.1-201ENST00000587192 1142 ntBASIC11.67□□□□□ -0.54
USH2AO75445 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
USH2AO75445 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC11.67□□□□□ -0.54
USH2AO75445 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
USH2AO75445 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC11.67□□□□□ -0.54
USH2AO75445 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
USH2AO75445 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
USH2AO75445 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
USH2AO75445 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
USH2AO75445 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC11.66□□□□□ -0.54
USH2AO75445 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC11.66□□□□□ -0.54
USH2AO75445 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC11.66□□□□□ -0.54
USH2AO75445 AC009831.1-201ENST00000580420 1582 ntBASIC11.66□□□□□ -0.54
USH2AO75445 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC11.65□□□□□ -0.54
USH2AO75445 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC11.65□□□□□ -0.54
USH2AO75445 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
USH2AO75445 PEMT-206ENST00000435340 960 ntTSL 5 BASIC11.65□□□□□ -0.54
USH2AO75445 MOB2-207ENST00000614710 705 ntTSL 5 BASIC11.65□□□□□ -0.54
USH2AO75445 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
USH2AO75445 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC11.64□□□□□ -0.55
USH2AO75445 BEX3-202ENST00000372634 753 ntTSL 2 BASIC11.64□□□□□ -0.55
USH2AO75445 DUX4L9-201ENST00000449051 1259 ntBASIC11.64□□□□□ -0.55
USH2AO75445 AC133552.2-201ENST00000619106 1032 ntBASIC11.64□□□□□ -0.55
USH2AO75445 AC148477.6-201ENST00000623746 465 ntBASIC11.64□□□□□ -0.55
USH2AO75445 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
USH2AO75445 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
USH2AO75445 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC11.64□□□□□ -0.55
USH2AO75445 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC11.64□□□□□ -0.55
USH2AO75445 AC008406.3-201ENST00000620001 1374 ntBASIC11.64□□□□□ -0.55
USH2AO75445 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
USH2AO75445 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
USH2AO75445 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
USH2AO75445 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC11.63□□□□□ -0.55
USH2AO75445 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
USH2AO75445 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC11.63□□□□□ -0.55
USH2AO75445 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
USH2AO75445 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
USH2AO75445 ECEL1P2-201ENST00000461596 1295 ntBASIC11.63□□□□□ -0.55
USH2AO75445 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC11.63□□□□□ -0.55
USH2AO75445 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC11.63□□□□□ -0.55
USH2AO75445 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
USH2AO75445 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
USH2AO75445 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC11.63□□□□□ -0.55
USH2AO75445 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
USH2AO75445 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
USH2AO75445 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
USH2AO75445 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
USH2AO75445 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
USH2AO75445 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
USH2AO75445 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC11.61□□□□□ -0.55
USH2AO75445 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
USH2AO75445 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC11.61□□□□□ -0.55
USH2AO75445 AC026202.3-201ENST00000600805 1127 ntBASIC11.6□□□□□ -0.55
USH2AO75445 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
USH2AO75445 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
USH2AO75445 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
USH2AO75445 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
USH2AO75445 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC11.6□□□□□ -0.55
USH2AO75445 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
USH2AO75445 RARRES2P6-201ENST00000567333 442 ntBASIC11.6□□□□□ -0.55
USH2AO75445 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
USH2AO75445 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC11.59□□□□□ -0.55
USH2AO75445 SPCS2P3-201ENST00000500401 656 ntBASIC11.59□□□□□ -0.55
USH2AO75445 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC11.59□□□□□ -0.55
USH2AO75445 AC139795.1-202ENST00000500444 432 ntBASIC11.59□□□□□ -0.55
USH2AO75445 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC11.59□□□□□ -0.55
USH2AO75445 AC103724.3-201ENST00000564481 992 ntBASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms