Protein–RNA interactions for Protein: A0A0B4J274

TRAV20, T-cell receptor alpha variable 20 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV20A0A0B4J274 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV20A0A0B4J274 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.31■■□□□ 1
TRAV20A0A0B4J274 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.31■■□□□ 1
TRAV20A0A0B4J274 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV20A0A0B4J274 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.3■■□□□ 1
TRAV20A0A0B4J274 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 AC127502.1-201ENST00000399971 1502 ntBASIC21.29■■□□□ 1
TRAV20A0A0B4J274 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.29■■□□□ 1
TRAV20A0A0B4J274 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.28■■□□□ 1
TRAV20A0A0B4J274 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV20A0A0B4J274 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.28■■□□□ 1
TRAV20A0A0B4J274 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
TRAV20A0A0B4J274 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV20A0A0B4J274 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV20A0A0B4J274 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.27■■□□□ 1
TRAV20A0A0B4J274 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
TRAV20A0A0B4J274 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
TRAV20A0A0B4J274 AC008813.1-201ENST00000536597 885 ntBASIC21.26■□□□□ 0.99
TRAV20A0A0B4J274 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.26■□□□□ 0.99
TRAV20A0A0B4J274 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.25■□□□□ 0.99
TRAV20A0A0B4J274 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.25■□□□□ 0.99
TRAV20A0A0B4J274 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV20A0A0B4J274 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV20A0A0B4J274 AL135925.1-201ENST00000605920 1701 ntBASIC21.24■□□□□ 0.99
TRAV20A0A0B4J274 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV20A0A0B4J274 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRAV20A0A0B4J274 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV20A0A0B4J274 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAV20A0A0B4J274 AC135983.2-203ENST00000454486 1613 ntBASIC21.23■□□□□ 0.99
TRAV20A0A0B4J274 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV20A0A0B4J274 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV20A0A0B4J274 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TRAV20A0A0B4J274 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV20A0A0B4J274 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAV20A0A0B4J274 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV20A0A0B4J274 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAV20A0A0B4J274 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV20A0A0B4J274 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV20A0A0B4J274 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
TRAV20A0A0B4J274 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV20A0A0B4J274 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV20A0A0B4J274 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV20A0A0B4J274 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.2■□□□□ 0.98
TRAV20A0A0B4J274 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TRAV20A0A0B4J274 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV20A0A0B4J274 WHAMMP2-203ENST00000563942 1603 ntBASIC21.19■□□□□ 0.98
TRAV20A0A0B4J274 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV20A0A0B4J274 GPX1-201ENST00000419349 1106 ntBASIC21.19■□□□□ 0.98
TRAV20A0A0B4J274 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.19■□□□□ 0.98
TRAV20A0A0B4J274 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV20A0A0B4J274 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.19■□□□□ 0.98
TRAV20A0A0B4J274 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV20A0A0B4J274 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV20A0A0B4J274 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TRAV20A0A0B4J274 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV20A0A0B4J274 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV20A0A0B4J274 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 RARRES2P2-201ENST00000394842 485 ntBASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 ABCB10P1-201ENST00000614297 2181 ntBASIC21.17■□□□□ 0.98
TRAV20A0A0B4J274 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV20A0A0B4J274 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV20A0A0B4J274 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV20A0A0B4J274 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRAV20A0A0B4J274 RNF126P1-201ENST00000567452 1320 ntBASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV20A0A0B4J274 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV20A0A0B4J274 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV20A0A0B4J274 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.13■□□□□ 0.97
TRAV20A0A0B4J274 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV20A0A0B4J274 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms