Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SCNM1-207ENST00000602841 749 ntTSL 312.55□□□□□ -0.42e-15■■□□□ 11.8
DDX55Q8NHQ9 SCNM1-206ENST00000497147 862 ntTSL 212.23□□□□□ -0.452e-15■■□□□ 11.8
DDX55Q8NHQ9 GANAB-215ENST00000534779 2626 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.471e-15■■□□□ 11.8
DDX55Q8NHQ9 SCNM1-203ENST00000459799 619 ntTSL 211.7□□□□□ -0.542e-15■■□□□ 11.8
DDX55Q8NHQ9 SCNM1-201ENST00000368902 869 ntTSL 2 BASIC10.7□□□□□ -0.72e-15■■□□□ 11.8
DDX55Q8NHQ9 SCNM1-202ENST00000368905 2016 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.812e-15■■□□□ 11.8
DDX55Q8NHQ9 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.32■□□□□ 0.846e-22■■□□□ 11.8
DDX55Q8NHQ9 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.456e-22■■□□□ 11.8
DDX55Q8NHQ9 EIF4A1-225ENST00000582746 1645 ntTSL 5 BASIC13.45□□□□□ -0.266e-22■■□□□ 11.8
DDX55Q8NHQ9 AC016876.2-201ENST00000581621 4554 ntTSL 2 BASIC12.15□□□□□ -0.466e-22■■□□□ 11.8
DDX55Q8NHQ9 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.91■□□□□ 0.147e-14■■□□□ 11.8
DDX55Q8NHQ9 APP-205ENST00000358918 2366 ntTSL 5 BASIC15.14■□□□□ 0.017e-14■■□□□ 11.8
DDX55Q8NHQ9 APP-213ENST00000464867 816 ntTSL 1 (best)12.14□□□□□ -0.477e-14■■□□□ 11.8
DDX55Q8NHQ9 APP-209ENST00000440126 2846 ntTSL 2 BASIC8.53□□□□□ -1.047e-14■■□□□ 11.8
DDX55Q8NHQ9 FAM234B-202ENST00000416494 2623 ntTSL 212.74□□□□□ -0.379e-13■■□□□ 11.8
DDX55Q8NHQ9 FAM234B-201ENST00000197268 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.599e-13■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-211ENST00000618568 1612 ntTSL 324.17■■□□□ 1.468e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.84■■□□□ 1.098e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.088e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.76■■□□□ 1.078e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-205ENST00000610414 1251 ntTSL 221.72■■□□□ 1.077e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-203ENST00000609188 225 ntTSL 521.11■□□□□ 0.977e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-209ENST00000612772 1375 ntTSL 320.76■□□□□ 0.917e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.63■□□□□ 0.898e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.778e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.58e-8■■□□□ 11.8
DDX55Q8NHQ9 ARFRP1-206ENST00000610774 5178 ntTSL 216.66■□□□□ 0.267e-8■■□□□ 11.8
DDX55Q8NHQ9 FGL1-206ENST00000518650 1093 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.017e-14■■□□□ 11.8
DDX55Q8NHQ9 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.39e-9■■□□□ 11.7
DDX55Q8NHQ9 GDI2-207ENST00000479928 2499 ntTSL 210.24□□□□□ -0.779e-9■■□□□ 11.7
DDX55Q8NHQ9 GDI2-205ENST00000447751 834 ntTSL 35□□□□□ -1.619e-9■■□□□ 11.7
DDX55Q8NHQ9 C19orf60-204ENST00000595490 410 ntTSL 319.88■□□□□ 0.772e-8■■□□□ 11.7
DDX55Q8NHQ9 C19orf60-203ENST00000595077 2465 nt14.91□□□□□ -0.022e-8■■□□□ 11.7
DDX55Q8NHQ9 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.789e-7■■□□□ 11.7
DDX55Q8NHQ9 ATP5G1-210ENST00000515060 433 ntTSL 316.12■□□□□ 0.173e-17■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC27.92■■■□□ 2.063e-7■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC26.57■■□□□ 1.843e-7■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.453e-7■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.68■■□□□ 1.383e-7■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.373e-7■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.013e-7■■□□□ 11.7
DDX55Q8NHQ9 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.213e-7■■□□□ 11.7
DDX55Q8NHQ9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.789e-78■■□□□ 11.7
DDX55Q8NHQ9 ACTB-207ENST00000462494 2245 ntTSL 517.84■□□□□ 0.459e-78■■□□□ 11.7
DDX55Q8NHQ9 ACTB-204ENST00000425660 1845 ntTSL 1 (best)17.22■□□□□ 0.359e-78■■□□□ 11.7
DDX55Q8NHQ9 ACTB-208ENST00000464611 715 ntTSL 59.15□□□□□ -0.949e-78■■□□□ 11.7
DDX55Q8NHQ9 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.463e-10■■□□□ 11.7
DDX55Q8NHQ9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.291e-6■■□□□ 11.7
DDX55Q8NHQ9 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.17■□□□□ 0.181e-6■■□□□ 11.7
DDX55Q8NHQ9 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.081e-6■■□□□ 11.7
DDX55Q8NHQ9 GRB2-204ENST00000392563 2851 ntTSL 1 (best) BASIC10.88□□□□□ -0.671e-6■■□□□ 11.7
DDX55Q8NHQ9 GRB2-205ENST00000392564 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.721e-6■■□□□ 11.7
DDX55Q8NHQ9 GRB2-209ENST00000581959 359 ntTSL 36.25□□□□□ -1.411e-6■■□□□ 11.7
DDX55Q8NHQ9 PRPF8-206ENST00000572723 959 ntTSL 214.58□□□□□ -0.084e-10■■□□□ 11.7
DDX55Q8NHQ9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.618e-29■■□□□ 11.7
DDX55Q8NHQ9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.438e-29■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.56■□□□□ 0.884e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.84e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.734e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.044e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-205ENST00000444354 1756 ntTSL 3 BASIC13.1□□□□□ -0.314e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-201ENST00000264312 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.324e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-203ENST00000396448 1306 ntTSL 1 (best) BASIC12.65□□□□□ -0.384e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-206ENST00000502972 1916 ntTSL 210.21□□□□□ -0.784e-8■■□□□ 11.7
DDX55Q8NHQ9 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC7.49□□□□□ -1.214e-8■■□□□ 11.7
DDX55Q8NHQ9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.8■■■□□ 2.684e-20■■□□□ 11.7
DDX55Q8NHQ9 UBE2S-202ENST00000587845 743 ntTSL 229.19■■■□□ 2.264e-20■■□□□ 11.7
DDX55Q8NHQ9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.294e-20■■□□□ 11.7
DDX55Q8NHQ9 CTTN-204ENST00000393747 1315 ntTSL 522.4■■□□□ 1.183e-6■■□□□ 11.7
DDX55Q8NHQ9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.88■□□□□ 0.773e-6■■□□□ 11.7
DDX55Q8NHQ9 CTTN-213ENST00000529736 952 ntTSL 317.22■□□□□ 0.353e-6■■□□□ 11.7
DDX55Q8NHQ9 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.243e-6■■□□□ 11.7
DDX55Q8NHQ9 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.193e-6■■□□□ 11.7
DDX55Q8NHQ9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.24■□□□□ 0.997e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.78■□□□□ 0.927e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.437e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-216ENST00000550184 1564 ntTSL 517.68■□□□□ 0.427e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.257e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-215ENST00000549566 685 ntTSL 2 BASIC15.8■□□□□ 0.127e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-212ENST00000548725 582 ntTSL 215.48■□□□□ 0.077e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-210ENST00000548400 573 ntTSL 3 BASIC15.45■□□□□ 0.067e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-206ENST00000547408 683 ntTSL 3 BASIC11.38□□□□□ -0.597e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.627e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-214ENST00000549392 411 ntTSL 510.95□□□□□ -0.667e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC9.62□□□□□ -0.877e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-211ENST00000548580 528 ntTSL 2 BASIC8.8□□□□□ -17e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-221ENST00000552297 454 ntTSL 38.28□□□□□ -1.087e-15■■□□□ 11.7
DDX55Q8NHQ9 MYL6-213ENST00000549017 502 ntTSL 3 BASIC7.23□□□□□ -1.257e-15■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.729e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.649e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-215ENST00000608689 969 ntTSL 517.73■□□□□ 0.439e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-217ENST00000609257 956 ntTSL 515.61■□□□□ 0.099e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-214ENST00000607954 1005 ntTSL 515.42■□□□□ 0.069e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-219ENST00000612731 544 ntTSL 314.37□□□□□ -0.119e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-216ENST00000608885 865 ntTSL 510.25□□□□□ -0.779e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-213ENST00000599785 880 ntTSL 59.77□□□□□ -0.859e-8■■□□□ 11.7
DDX55Q8NHQ9 PLCG1-218ENST00000609821 570 ntTSL 58.3□□□□□ -1.089e-8■■□□□ 11.7
DDX55Q8NHQ9 C2orf82-207ENST00000476690 490 ntTSL 329.35■■■□□ 2.295e-7■■□□□ 11.7
DDX55Q8NHQ9 C2orf82-205ENST00000449331 466 ntTSL 326.74■■□□□ 1.875e-7■■□□□ 11.7
DDX55Q8NHQ9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.835e-7■■□□□ 11.7
Retrieved 100 of 15,504 protein–RNA pairs in 89.7 ms