Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 PPME1-208ENST00000543525 1928 ntTSL 1 (best)10.94□□□□□ -0.661e-6■■□□□ 14
SUB1P53999 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.841e-6■■□□□ 14
SUB1P53999 PPME1-202ENST00000398427 2496 ntTSL 1 (best) BASIC8.86□□□□□ -0.991e-6■■□□□ 14
SUB1P53999 PPME1-205ENST00000539021 4055 ntTSL 27.06□□□□□ -1.281e-6■■□□□ 14
SUB1P53999 PPME1-204ENST00000538501 744 ntTSL 1 (best)5.63□□□□□ -1.511e-6■■□□□ 14
SUB1P53999 PPME1-206ENST00000541340 3618 ntTSL 1 (best)5.5□□□□□ -1.531e-6■■□□□ 14
SUB1P53999 RPL18-210ENST00000550671 764 ntTSL 29.85□□□□□ -0.831e-6■■□□□ 14
SUB1P53999 RPL18-216ENST00000552851 691 ntTSL 58.6□□□□□ -1.031e-6■■□□□ 14
SUB1P53999 HSBP1-201ENST00000433866 8784 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.791e-12■■□□□ 14
SUB1P53999 HSBP1-204ENST00000570259 1020 ntAPPRIS P1 TSL 3 BASIC9.48□□□□□ -0.891e-12■■□□□ 14
SUB1P53999 HSBP1-203ENST00000569301 551 ntTSL 23.48□□□□□ -1.851e-12■■□□□ 14
SUB1P53999 STXBP2-212ENST00000597467 821 ntTSL 316.9■□□□□ 0.32e-8■■□□□ 14
SUB1P53999 STXBP2-210ENST00000595950 552 ntTSL 516.9■□□□□ 0.32e-8■■□□□ 14
SUB1P53999 STXBP2-218ENST00000599905 589 ntTSL 415.08■□□□□ 02e-8■■□□□ 14
SUB1P53999 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.62□□□□□ -0.072e-8■■□□□ 14
SUB1P53999 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.142e-8■■□□□ 14
SUB1P53999 AC008763.2-202ENST00000599243 570 ntAPPRIS ALT2 TSL 414.05□□□□□ -0.162e-8■■□□□ 14
SUB1P53999 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.182e-8■■□□□ 14
SUB1P53999 AC008763.2-201ENST00000598664 537 ntAPPRIS P5 TSL 512.01□□□□□ -0.492e-8■■□□□ 14
SUB1P53999 STXBP2-211ENST00000597068 1785 ntTSL 1 (best)11.53□□□□□ -0.562e-8■■□□□ 14
SUB1P53999 STXBP2-217ENST00000599737 1523 ntTSL 511.38□□□□□ -0.592e-8■■□□□ 14
SUB1P53999 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.772e-8■■□□□ 14
SUB1P53999 STXBP2-204ENST00000593535 549 ntTSL 49.49□□□□□ -0.892e-8■■□□□ 14
SUB1P53999 STXBP2-207ENST00000595181 632 ntTSL 27.4□□□□□ -1.222e-8■■□□□ 14
SUB1P53999 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.26□□□□□ -0.138e-8■■□□□ 14
SUB1P53999 PSMD4-211ENST00000476855 1232 ntTSL 212.39□□□□□ -0.438e-8■■□□□ 14
SUB1P53999 PSMD4-202ENST00000368884 1350 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.938e-8■■□□□ 14
SUB1P53999 PSMD4-204ENST00000437736 787 ntTSL 57.79□□□□□ -1.168e-8■■□□□ 14
SUB1P53999 PSMD4-208ENST00000462970 900 ntTSL 57.34□□□□□ -1.238e-8■■□□□ 14
SUB1P53999 TSG101-203ENST00000535077 685 ntTSL 314.62□□□□□ -0.071e-11■■□□□ 14
SUB1P53999 TSG101-210ENST00000545247 783 ntTSL 313.9□□□□□ -0.181e-11■■□□□ 14
SUB1P53999 TSG101-202ENST00000438874 581 ntTSL 1 (best)13.69□□□□□ -0.221e-11■■□□□ 14
SUB1P53999 TSG101-209ENST00000544804 391 ntTSL 311.1□□□□□ -0.631e-11■■□□□ 14
SUB1P53999 RBM3-208ENST00000489344 724 ntTSL 210.3□□□□□ -0.769e-12■■□□□ 14
SUB1P53999 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.58■□□□□ 0.571e-41■■□□□ 14
SUB1P53999 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.531e-41■■□□□ 14
SUB1P53999 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.361e-41■■□□□ 14
SUB1P53999 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.361e-41■■□□□ 14
SUB1P53999 ATP5G2-203ENST00000495596 1976 ntTSL 1 (best)10.68□□□□□ -0.71e-41■■□□□ 14
SUB1P53999 ATP5G2-202ENST00000394349 878 ntTSL 2 BASIC9.37□□□□□ -0.911e-41■■□□□ 14
SUB1P53999 ATP5G2-206ENST00000550241 406 ntTSL 36.44□□□□□ -1.381e-41■■□□□ 14
SUB1P53999 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC4.77□□□□□ -1.651e-41■■□□□ 14
SUB1P53999 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.443e-9■■□□□ 14
SUB1P53999 ELAVL1-204ENST00000596154 880 ntTSL 36.21□□□□□ -1.423e-9■■□□□ 14
SUB1P53999 TOP1-201ENST00000361337 3738 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.251e-6■■□□□ 13.9
SUB1P53999 ENO1-206ENST00000497492 647 ntTSL 29.49□□□□□ -0.894e-27■■□□□ 13.9
SUB1P53999 ATP5B-209ENST00000551570 399 ntTSL 36.58□□□□□ -1.366e-40■■□□□ 13.9
SUB1P53999 SRP9-202ENST00000366838 540 ntTSL 2 BASIC8.95□□□□□ -0.981e-28■■□□□ 13.9
SUB1P53999 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.55■□□□□ 0.882e-15■■□□□ 13.9
SUB1P53999 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.292e-15■■□□□ 13.9
SUB1P53999 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.317e-7■■□□□ 13.9
SUB1P53999 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.94■□□□□ 0.37e-7■■□□□ 13.9
SUB1P53999 SYNGR2-204ENST00000589168 2125 ntTSL 214.69□□□□□ -0.067e-7■■□□□ 13.9
SUB1P53999 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.78□□□□□ -0.27e-7■■□□□ 13.9
SUB1P53999 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.337e-7■■□□□ 13.9
SUB1P53999 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC12.41□□□□□ -0.427e-7■■□□□ 13.9
SUB1P53999 SYNGR2-209ENST00000592456 3036 nt9.9□□□□□ -0.827e-7■■□□□ 13.9
SUB1P53999 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC5.77□□□□□ -1.491e-6■■□□□ 13.8
SUB1P53999 NAT10-202ENST00000527971 1600 ntTSL 2 BASIC10.1□□□□□ -0.793e-7■■□□□ 13.8
SUB1P53999 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC6.82□□□□□ -1.323e-7■■□□□ 13.8
SUB1P53999 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.393e-7■■□□□ 13.8
SUB1P53999 NUP214-203ENST00000451030 5021 ntTSL 1 (best) BASIC10□□□□□ -0.812e-10■■□□□ 13.8
SUB1P53999 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7.87□□□□□ -1.152e-10■■□□□ 13.8
SUB1P53999 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.282e-10■■□□□ 13.8
SUB1P53999 NUP214-225ENST00000531584 545 ntTSL 44.02□□□□□ -1.772e-10■■□□□ 13.8
SUB1P53999 CANX-213ENST00000507307 582 ntTSL 514.18□□□□□ -0.145e-18■■□□□ 13.8
SUB1P53999 CANX-217ENST00000513246 727 ntTSL 513.63□□□□□ -0.235e-18■■□□□ 13.8
SUB1P53999 CANX-215ENST00000509563 569 ntTSL 44.27□□□□□ -1.735e-18■■□□□ 13.8
SUB1P53999 AP3M1-202ENST00000372745 2320 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.262e-6■■□□□ 13.8
SUB1P53999 HSPA8-212ENST00000528292 1112 ntTSL 24.64□□□□□ -1.673e-7■■□□□ 13.8
SUB1P53999 PDIA3-202ENST00000434494 2107 ntTSL 211.69□□□□□ -0.543e-9■■□□□ 13.8
SUB1P53999 PDIA3-201ENST00000300289 3727 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.993e-9■■□□□ 13.8
SUB1P53999 PDIA3-206ENST00000497349 739 ntTSL 23.38□□□□□ -1.873e-9■■□□□ 13.8
SUB1P53999 GABARAPL2-204ENST00000565985 2274 nt6.23□□□□□ -1.418e-7■■□□□ 13.8
SUB1P53999 ATP5O-209ENST00000495005 586 ntTSL 27.4□□□□□ -1.221e-8■■□□□ 13.8
SUB1P53999 CIRBP-229ENST00000590704 1456 ntTSL 216.03■□□□□ 0.161e-27■■□□□ 13.8
SUB1P53999 CIRBP-230ENST00000591055 928 ntTSL 211.49□□□□□ -0.571e-27■■□□□ 13.8
SUB1P53999 UFC1-201ENST00000368003 1114 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.881e-6■■□□□ 13.8
SUB1P53999 SRP14-202ENST00000558243 770 ntTSL 511.12□□□□□ -0.635e-12■■□□□ 13.8
SUB1P53999 SRP14-208ENST00000560773 468 ntTSL 3 BASIC9.49□□□□□ -0.895e-12■■□□□ 13.8
SUB1P53999 SRP14-205ENST00000559081 578 ntTSL 2 BASIC7.7□□□□□ -1.185e-12■■□□□ 13.8
SUB1P53999 KPNB1-210ENST00000580573 556 ntTSL 36.28□□□□□ -1.45e-12■■□□□ 13.8
SUB1P53999 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.143e-7■■□□□ 13.8
SUB1P53999 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC13.68□□□□□ -0.223e-7■■□□□ 13.8
SUB1P53999 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC10.81□□□□□ -0.683e-7■■□□□ 13.8
SUB1P53999 EIF3I-202ENST00000373586 1458 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.956e-8■■□□□ 13.8
SUB1P53999 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.525e-8■■□□□ 13.7
SUB1P53999 RSL24D1-204ENST00000564344 269 ntTSL 59.86□□□□□ -0.837e-23■■□□□ 13.7
SUB1P53999 RSL24D1-203ENST00000562993 940 ntTSL 33.67□□□□□ -1.827e-23■■□□□ 13.7
SUB1P53999 SNU13-203ENST00000401959 1670 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.732e-6■■□□□ 13.7
SUB1P53999 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.842e-6■■□□□ 13.7
SUB1P53999 SNU13-202ENST00000355257 1503 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.992e-6■■□□□ 13.7
SUB1P53999 CPOX-202ENST00000510489 526 ntTSL 23.29□□□□□ -1.885e-9■■□□□ 13.7
SUB1P53999 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.415e-16■■□□□ 13.7
SUB1P53999 MCM7-209ENST00000485286 2900 ntTSL 214.13□□□□□ -0.152e-7■■□□□ 13.7
SUB1P53999 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.42□□□□□ -0.262e-7■■□□□ 13.7
SUB1P53999 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.26□□□□□ -0.452e-7■■□□□ 13.7
SUB1P53999 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC10.32□□□□□ -0.762e-7■■□□□ 13.7
SUB1P53999 MCM7-201ENST00000303887 2957 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.862e-7■■□□□ 13.7
SUB1P53999 MCM7-210ENST00000489841 2515 ntTSL 1 (best)7.97□□□□□ -1.132e-7■■□□□ 13.7
Retrieved 100 of 11,644 protein–RNA pairs in 205.7 ms