RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 NISCHQ9Y2I1 1504 aa13.97□□□□□ -0.17
CSDE1-201ENST00000261443 HRCP23327 699 aa12.26□□□□□ -0.45
CSDE1-201ENST00000261443 PELP1Q8IZL8 1130 aaKnown RBP12.01□□□□□ -0.49
CSDE1-201ENST00000261443 PPARGC1BQ86YN6 1023 aaKnown RBP11.98□□□□□ -0.49
CSDE1-201ENST00000261443 PCGF6Q9BYE7 350 aa11.96□□□□□ -0.49
CSDE1-201ENST00000261443 CCDC180Q9P1Z9 1646 aa11.91□□□□□ -0.5
CSDE1-201ENST00000261443 SUPT5HO00267 1087 aaKnown RBP11.91□□□□□ -0.5
CSDE1-201ENST00000261443 SHROOM4Q9ULL8 1493 aa11.9□□□□□ -0.5
CSDE1-201ENST00000261443 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
CSDE1-201ENST00000261443 MYO15BQ96JP2 1530 aa11.83□□□□□ -0.52
CSDE1-201ENST00000261443 CHIC1Q5VXU3 224 aa11.75□□□□□ -0.53
CSDE1-201ENST00000261443 SCAF1Q9H7N4 1312 aaKnown RBP11.65□□□□□ -0.55
CSDE1-201ENST00000261443 DCAF1Q9Y4B6 1507 aa11.63□□□□□ -0.55
CSDE1-201ENST00000261443 MYT1Q01538 1121 aa11.58□□□□□ -0.56
CSDE1-201ENST00000261443 TRIM26Q12899 539 aaPredicted RBP11.56□□□□□ -0.56
CSDE1-201ENST00000261443 ZEB1P37275 1124 aaPredicted RBP11.52□□□□□ -0.56
CSDE1-201ENST00000261443 LOC105371045A0A1W2PR82 267 aa11.48□□□□□ -0.57
CSDE1-201ENST00000261443 ACIN1Q9UKV3 1341 aaKnown RBP11.34□□□□□ -0.59
CSDE1-201ENST00000261443 NEUROD1Q13562 356 aa11.3□□□□□ -0.6
CSDE1-201ENST00000261443 DCAF8L2P0C7V8 631 aa11.28□□□□□ -0.6
CSDE1-201ENST00000261443 GTF3C3Q9Y5Q9 886 aa11.26□□□□□ -0.61
CSDE1-201ENST00000261443 CENPBP07199 599 aaPredicted RBP11.22□□□□□ -0.61
CSDE1-201ENST00000261443 ABCC9O60706 1549 aa11.19□□□□□ -0.62
CSDE1-201ENST00000261443 SCRIBQ14160 1630 aa11.13□□□□□ -0.63
CSDE1-201ENST00000261443 DIEXFQ68CQ4 756 aaKnown RBP11.11□□□□□ -0.63
CSDE1-201ENST00000261443 CCER1Q8TC90 406 aaPredicted RBP11.05□□□□□ -0.64
CSDE1-201ENST00000261443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.05□□□□□ -0.64
CSDE1-201ENST00000261443 RSF1Q96T23 1441 aaPredicted RBP11.04□□□□□ -0.64
CSDE1-201ENST00000261443 FAM9AQ8IZU1 332 aaPredicted RBP11.01□□□□□ -0.65
CSDE1-201ENST00000261443 TRIM41Q8WV44 630 aa11.01□□□□□ -0.65
CSDE1-201ENST00000261443 RB1CC1Q8TDY2 1594 aa10.98□□□□□ -0.65
CSDE1-201ENST00000261443 EHMT2Q96KQ7 1210 aa10.97□□□□□ -0.65
CSDE1-201ENST00000261443 NACADO15069 1562 aa10.95□□□□□ -0.66
CSDE1-201ENST00000261443 CECR2Q9BXF3 1484 aa10.94□□□□□ -0.66
CSDE1-201ENST00000261443 YTHDC1Q96MU7 727 aaKnown RBP10.93□□□□□ -0.66
CSDE1-201ENST00000261443 MROH2BQ7Z745 1585 aa10.9□□□□□ -0.66
CSDE1-201ENST00000261443 TTBK1Q5TCY1 1321 aaPredicted RBP10.88□□□□□ -0.67
CSDE1-201ENST00000261443 ZNF316A6NFI3 1004 aaPredicted RBP10.87□□□□□ -0.67
CSDE1-201ENST00000261443 WIZO95785 1651 aa10.85□□□□□ -0.67
CSDE1-201ENST00000261443 UNC13AQ9UPW8 1703 aa10.83□□□□□ -0.68
CSDE1-201ENST00000261443 EIF4G1Q04637 1599 aaKnown RBP10.82□□□□□ -0.68
CSDE1-201ENST00000261443 MIER1Q8N108 512 aa10.8□□□□□ -0.68
CSDE1-201ENST00000261443 BCL11AQ9H165 835 aa10.79□□□□□ -0.68
CSDE1-201ENST00000261443 ANP32EQ9BTT0 268 aa10.75□□□□□ -0.69
CSDE1-201ENST00000261443 BAZ1AQ9NRL2 1556 aaPredicted RBP10.75□□□□□ -0.69
CSDE1-201ENST00000261443 CLSPNQ9HAW4 1339 aa10.69□□□□□ -0.7
CSDE1-201ENST00000261443 SUPT16HQ9Y5B9 1047 aaKnown RBP10.69□□□□□ -0.7
CSDE1-201ENST00000261443 SMARCA4P51532 1647 aa10.67□□□□□ -0.7
CSDE1-201ENST00000261443 TSHZ2Q9NRE2 1034 aa10.67□□□□□ -0.7
CSDE1-201ENST00000261443 BICRAQ9NZM4 1560 aa10.66□□□□□ -0.7
CSDE1-201ENST00000261443 WRNQ14191 1432 aaPredicted RBP eCLIP10.64□□□□□ -0.712e-7■□□□□ 9.9
CSDE1-201ENST00000261443 TOP2AP11388 1531 aaKnown RBP10.62□□□□□ -0.71
CSDE1-201ENST00000261443 CSRNP3Q8WYN3 585 aa10.62□□□□□ -0.71
CSDE1-201ENST00000261443 SMARCA2P51531 1590 aa10.62□□□□□ -0.71
CSDE1-201ENST00000261443 CCDC88BA6NC98 1476 aa10.58□□□□□ -0.72
CSDE1-201ENST00000261443 ABCC8Q09428 1581 aa10.57□□□□□ -0.72
CSDE1-201ENST00000261443 CEP162Q5TB80 1403 aa10.57□□□□□ -0.72
CSDE1-201ENST00000261443 HNRNPUL2Q1KMD3 747 aaKnown RBP10.53□□□□□ -0.72
CSDE1-201ENST00000261443 PEG3Q9GZU2 1588 aa10.51□□□□□ -0.73
CSDE1-201ENST00000261443 TNIKQ9UKE5 1360 aa10.48□□□□□ -0.73
CSDE1-201ENST00000261443 BCANQ96GW7 911 aa10.45□□□□□ -0.74
CSDE1-201ENST00000261443 UBTFP17480 764 aaKnown RBP10.45□□□□□ -0.74
CSDE1-201ENST00000261443 PABPN1Q86U42 306 aaKnown RBP eCLIP10.45□□□□□ -0.74
CSDE1-201ENST00000261443 RUSC2Q8N2Y8 1516 aa10.45□□□□□ -0.74
CSDE1-201ENST00000261443 SOGA1O94964 1423 aa10.43□□□□□ -0.74
CSDE1-201ENST00000261443 RBM19Q9Y4C8 960 aaKnown RBP10.41□□□□□ -0.74
CSDE1-201ENST00000261443 FKBP8Q14318 412 aa10.4□□□□□ -0.74
CSDE1-201ENST00000261443 SYNJ1O43426 1573 aa10.38□□□□□ -0.75
CSDE1-201ENST00000261443 PRKCSHP14314 528 aaPredicted RBP10.38□□□□□ -0.75
CSDE1-201ENST00000261443 ATAD2BQ9ULI0 1458 aa10.37□□□□□ -0.75
CSDE1-201ENST00000261443 EEA1Q15075 1411 aa10.35□□□□□ -0.75
CSDE1-201ENST00000261443 KCNH8Q96L42 1107 aa10.34□□□□□ -0.75
CSDE1-201ENST00000261443 GOLGA3Q08378 1498 aa10.34□□□□□ -0.75
CSDE1-201ENST00000261443 NEFLP07196 543 aa10.33□□□□□ -0.76
CSDE1-201ENST00000261443 APLP2Q06481 763 aa10.32□□□□□ -0.76
CSDE1-201ENST00000261443 DHX57Q6P158 1386 aaKnown RBP10.31□□□□□ -0.76
CSDE1-201ENST00000261443 MSH5O43196 834 aa10.31□□□□□ -0.76
CSDE1-201ENST00000261443 ITGAEP38570 1179 aa10.29□□□□□ -0.76
CSDE1-201ENST00000261443 ERICH6Q7L0X2 663 aa10.29□□□□□ -0.76
CSDE1-201ENST00000261443 CLIP1P30622 1438 aa10.26□□□□□ -0.77
CSDE1-201ENST00000261443 VPS8Q8N3P4 1428 aa10.26□□□□□ -0.77
CSDE1-201ENST00000261443 BAZ1BQ9UIG0 1483 aaKnown RBP10.26□□□□□ -0.77
CSDE1-201ENST00000261443 FANCIQ9NVI1 1328 aa10.24□□□□□ -0.77
CSDE1-201ENST00000261443 KIF21BO75037 1637 aa10.24□□□□□ -0.77
CSDE1-201ENST00000261443 CEP164Q9UPV0 1460 aa10.22□□□□□ -0.77
CSDE1-201ENST00000261443 MYT1LQ9UL68 1186 aa10.22□□□□□ -0.77
CSDE1-201ENST00000261443 TOP2BQ02880 1626 aa10.21□□□□□ -0.77
CSDE1-201ENST00000261443 BIVM-ERCC5R4GMW8 1640 aa10.21□□□□□ -0.77
CSDE1-201ENST00000261443 DDX10Q13206 875 aaKnown RBP10.19□□□□□ -0.78
CSDE1-201ENST00000261443 TRIM52Q96A61 297 aa10.19□□□□□ -0.78
CSDE1-201ENST00000261443 DEKP35659 375 aaKnown RBP10.18□□□□□ -0.78
CSDE1-201ENST00000261443 CDK11AQ9UQ88 783 aaPredicted RBP10.18□□□□□ -0.78
CSDE1-201ENST00000261443 RAPGEF2Q9Y4G8 1499 aa10.18□□□□□ -0.78
CSDE1-201ENST00000261443 RANGAP1P46060 587 aaPredicted RBP10.18□□□□□ -0.78
CSDE1-201ENST00000261443 HMGXB3Q12766 1538 aa10.17□□□□□ -0.78
CSDE1-201ENST00000261443 NCAPD3P42695 1498 aa10.16□□□□□ -0.78
CSDE1-201ENST00000261443 CUX1P39880 1505 aa10.14□□□□□ -0.79
CSDE1-201ENST00000261443 CCER2I3L3R5 266 aa10.13□□□□□ -0.79
CSDE1-201ENST00000261443 ANP32CO43423 234 aa10.11□□□□□ -0.79
CSDE1-201ENST00000261443 PPP1R15AO75807 674 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms