Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.59■□□□□ 0.09
CDX1P47902 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.59■□□□□ 0.09
CDX1P47902 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.59■□□□□ 0.09
CDX1P47902 GCSHP5-201ENST00000443090 522 ntBASIC15.59■□□□□ 0.09
CDX1P47902 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
CDX1P47902 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.59■□□□□ 0.09
CDX1P47902 AC006557.6-201ENST00000623071 864 ntBASIC15.59■□□□□ 0.09
CDX1P47902 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CDX1P47902 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
CDX1P47902 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.59■□□□□ 0.09
CDX1P47902 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDX1P47902 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.59■□□□□ 0.09
CDX1P47902 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.58■□□□□ 0.09
CDX1P47902 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.09
CDX1P47902 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC15.58■□□□□ 0.09
CDX1P47902 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDX1P47902 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CDX1P47902 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CDX1P47902 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC15.58■□□□□ 0.08
CDX1P47902 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.58■□□□□ 0.08
CDX1P47902 RN7SL471P-201ENST00000580476 299 ntBASIC15.58■□□□□ 0.08
CDX1P47902 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.58■□□□□ 0.08
CDX1P47902 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.58■□□□□ 0.08
CDX1P47902 AP006294.2-201ENST00000641667 209 ntBASIC15.58■□□□□ 0.08
CDX1P47902 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.58■□□□□ 0.08
CDX1P47902 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 FP700111.2-201ENST00000619190 1892 ntBASIC15.58■□□□□ 0.08
CDX1P47902 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.58■□□□□ 0.08
CDX1P47902 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CDX1P47902 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDX1P47902 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.58■□□□□ 0.08
CDX1P47902 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.58■□□□□ 0.08
CDX1P47902 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.57■□□□□ 0.08
CDX1P47902 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 AC011270.2-201ENST00000624293 2550 ntBASIC15.57■□□□□ 0.08
CDX1P47902 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 HLA-G-202ENST00000376815 851 ntBASIC15.57■□□□□ 0.08
CDX1P47902 HLA-G-203ENST00000376818 1127 ntBASIC15.57■□□□□ 0.08
CDX1P47902 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC15.57■□□□□ 0.08
CDX1P47902 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.57■□□□□ 0.08
CDX1P47902 AC098590.1-201ENST00000468126 897 ntBASIC15.57■□□□□ 0.08
CDX1P47902 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.57■□□□□ 0.08
CDX1P47902 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 KLF2-202ENST00000592003 564 ntTSL 3 BASIC15.57■□□□□ 0.08
CDX1P47902 AC069544.1-201ENST00000609399 999 ntBASIC15.57■□□□□ 0.08
CDX1P47902 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CDX1P47902 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.57■□□□□ 0.08
CDX1P47902 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CDX1P47902 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC15.57■□□□□ 0.08
CDX1P47902 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CDX1P47902 AC007225.1-201ENST00000566331 1836 ntBASIC15.57■□□□□ 0.08
CDX1P47902 BID-203ENST00000399765 1879 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms