Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.62■■□□□ 1.21
HMGB1P09429 AC073195.1-201ENST00000607241 877 ntBASIC22.62■■□□□ 1.21
HMGB1P09429 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 KRT16P1-201ENST00000399124 1418 ntBASIC22.62■■□□□ 1.21
HMGB1P09429 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC22.62■■□□□ 1.21
HMGB1P09429 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
HMGB1P09429 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC22.62■■□□□ 1.21
HMGB1P09429 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB1P09429 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGB1P09429 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC22.61■■□□□ 1.21
HMGB1P09429 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.61■■□□□ 1.21
HMGB1P09429 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB1P09429 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
HMGB1P09429 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.61■■□□□ 1.21
HMGB1P09429 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.61■■□□□ 1.21
HMGB1P09429 AC142381.4-202ENST00000563973 229 ntBASIC22.61■■□□□ 1.21
HMGB1P09429 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC22.61■■□□□ 1.21
HMGB1P09429 GOLGA6L5P-202ENST00000515341 1828 ntBASIC22.61■■□□□ 1.21
HMGB1P09429 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB1P09429 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HMGB1P09429 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC22.6■■□□□ 1.21
HMGB1P09429 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
HMGB1P09429 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.6■■□□□ 1.21
HMGB1P09429 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC22.6■■□□□ 1.21
HMGB1P09429 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
HMGB1P09429 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGB1P09429 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGB1P09429 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 GCSHP5-201ENST00000443090 522 ntBASIC22.59■■□□□ 1.21
HMGB1P09429 UBE2SP1-201ENST00000450587 669 ntBASIC22.59■■□□□ 1.21
HMGB1P09429 AC098590.1-201ENST00000468126 897 ntBASIC22.59■■□□□ 1.21
HMGB1P09429 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC22.59■■□□□ 1.21
HMGB1P09429 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGB1P09429 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.59■■□□□ 1.21
HMGB1P09429 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.59■■□□□ 1.21
HMGB1P09429 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC22.59■■□□□ 1.21
HMGB1P09429 AL031985.4-201ENST00000642138 673 ntBASIC22.59■■□□□ 1.21
HMGB1P09429 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGB1P09429 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
HMGB1P09429 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.59■■□□□ 1.21
HMGB1P09429 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGB1P09429 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.59■■□□□ 1.21
HMGB1P09429 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
HMGB1P09429 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
HMGB1P09429 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
HMGB1P09429 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC22.58■■□□□ 1.21
HMGB1P09429 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.58■■□□□ 1.21
HMGB1P09429 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
HMGB1P09429 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB1P09429 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB1P09429 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB1P09429 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB1P09429 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB1P09429 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HMGB1P09429 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
HMGB1P09429 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC22.58■■□□□ 1.21
HMGB1P09429 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC22.58■■□□□ 1.21
HMGB1P09429 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.58■■□□□ 1.21
HMGB1P09429 RPS15-203ENST00000586096 570 ntTSL 2 BASIC22.58■■□□□ 1.21
HMGB1P09429 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC22.58■■□□□ 1.21
HMGB1P09429 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
HMGB1P09429 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HMGB1P09429 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.57■■□□□ 1.2
HMGB1P09429 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC22.57■■□□□ 1.2
HMGB1P09429 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
HMGB1P09429 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.57■■□□□ 1.2
HMGB1P09429 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HMGB1P09429 ABHD17AP1-201ENST00000358206 933 ntBASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms