Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 AC036111.1-201ENST00000533973 1582 ntBASIC18.48■□□□□ 0.55
CDX4O14627 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX4O14627 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CDX4O14627 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.48■□□□□ 0.55
CDX4O14627 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.48■□□□□ 0.55
CDX4O14627 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CDX4O14627 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 AL136038.4-201ENST00000603606 1261 ntBASIC18.48■□□□□ 0.55
CDX4O14627 AL121912.1-201ENST00000603683 238 ntBASIC18.48■□□□□ 0.55
CDX4O14627 AL157888.1-201ENST00000631930 593 ntBASIC18.48■□□□□ 0.55
CDX4O14627 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX4O14627 AL391807.1-203ENST00000604392 2365 ntBASIC18.48■□□□□ 0.55
CDX4O14627 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.48■□□□□ 0.55
CDX4O14627 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CDX4O14627 HLA-A-201ENST00000376802 1334 ntBASIC18.48■□□□□ 0.55
CDX4O14627 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.47■□□□□ 0.55
CDX4O14627 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.47■□□□□ 0.55
CDX4O14627 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.47■□□□□ 0.55
CDX4O14627 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX4O14627 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDX4O14627 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.47■□□□□ 0.55
CDX4O14627 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CDX4O14627 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX4O14627 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
CDX4O14627 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX4O14627 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDX4O14627 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX4O14627 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX4O14627 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX4O14627 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CDX4O14627 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX4O14627 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.46■□□□□ 0.55
CDX4O14627 KRT16P4-201ENST00000453883 522 ntBASIC18.46■□□□□ 0.55
CDX4O14627 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX4O14627 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX4O14627 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.46■□□□□ 0.55
CDX4O14627 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.46■□□□□ 0.55
CDX4O14627 BX640515.1-201ENST00000617215 977 ntBASIC18.46■□□□□ 0.55
CDX4O14627 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDX4O14627 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX4O14627 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX4O14627 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CDX4O14627 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX4O14627 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CDX4O14627 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CDX4O14627 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 AL023284.2-201ENST00000405850 579 ntBASIC18.45■□□□□ 0.54
CDX4O14627 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CDX4O14627 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.45■□□□□ 0.54
CDX4O14627 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.45■□□□□ 0.54
CDX4O14627 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.45■□□□□ 0.54
CDX4O14627 AC120114.3-201ENST00000611923 658 ntBASIC18.45■□□□□ 0.54
CDX4O14627 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.45■□□□□ 0.54
CDX4O14627 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.45■□□□□ 0.54
CDX4O14627 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CDX4O14627 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
CDX4O14627 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX4O14627 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CDX4O14627 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX4O14627 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CDX4O14627 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX4O14627 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.44■□□□□ 0.54
CDX4O14627 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX4O14627 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms