Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.053e-9■■■■□ 20
UPF1Q92900 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.053e-9■■■■□ 20
UPF1Q92900 EPS8L2-208ENST00000526909 3844 ntTSL 513.18□□□□□ -0.33e-9■■■■□ 20
UPF1Q92900 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.11e-6■■■■□ 20
UPF1Q92900 AC016026.1-201ENST00000476405 4328 ntTSL 2 BASIC11.24□□□□□ -0.611e-6■■■■□ 20
UPF1Q92900 CDIPT-206ENST00000564296 1015 ntTSL 226.78■■□□□ 1.889e-9■■■■□ 20
UPF1Q92900 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.014e-8■■■■□ 20
UPF1Q92900 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.034e-8■■■■□ 20
UPF1Q92900 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.174e-8■■■■□ 20
UPF1Q92900 PVR-201ENST00000187830 3132 ntTSL 213.71□□□□□ -0.214e-8■■■■□ 20
UPF1Q92900 AHCYL1-201ENST00000359172 2503 ntTSL 1 (best) BASIC10.37□□□□□ -0.758e-14■■■■□ 20
UPF1Q92900 SREBF1-204ENST00000395756 3026 ntTSL 219.27■□□□□ 0.671e-9■■■■□ 19.9
UPF1Q92900 SREBF1-203ENST00000395751 4653 ntTSL 216.12■□□□□ 0.171e-9■■■■□ 19.9
UPF1Q92900 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.091e-9■■■■□ 19.9
UPF1Q92900 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.071e-9■■■■□ 19.9
UPF1Q92900 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.21e-9■■■■□ 19.9
UPF1Q92900 LINC00963-211ENST00000608369 961 ntTSL 5 BASIC16.99■□□□□ 0.312e-6■■■■□ 19.9
UPF1Q92900 LINC00963-214ENST00000622680 781 ntTSL 1 (best)16.65■□□□□ 0.262e-6■■■■□ 19.9
UPF1Q92900 LINC00963-207ENST00000454635 910 ntTSL 5 BASIC14.93□□□□□ -0.022e-6■■■■□ 19.9
UPF1Q92900 LINC00963-218ENST00000624138 261 ntTSL 511.8□□□□□ -0.522e-6■■■■□ 19.9
UPF1Q92900 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.473e-9■■■■□ 19.9
UPF1Q92900 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.453e-9■■■■□ 19.9
UPF1Q92900 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.276e-8■■■■□ 19.9
UPF1Q92900 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.332e-6■■■■□ 19.9
UPF1Q92900 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.532e-6■■■■□ 19.9
UPF1Q92900 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.532e-6■■■■□ 19.9
UPF1Q92900 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.542e-6■■■■□ 19.9
UPF1Q92900 MADD-206ENST00000402192 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.552e-6■■■■□ 19.9
UPF1Q92900 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.562e-6■■■■□ 19.9
UPF1Q92900 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.592e-6■■■■□ 19.9
UPF1Q92900 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.62e-6■■■■□ 19.9
UPF1Q92900 PIP5K1A-203ENST00000368890 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.074e-6■■■■□ 19.9
UPF1Q92900 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.344e-6■■■■□ 19.9
UPF1Q92900 PIP5K1A-201ENST00000349792 3767 ntAPPRIS P3 TSL 1 (best)12.68□□□□□ -0.384e-6■■■■□ 19.9
UPF1Q92900 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -11e-7■■■■□ 19.9
UPF1Q92900 MYH9-201ENST00000216181 7501 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.511e-7■■■■□ 19.9
UPF1Q92900 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.062e-6■■■■□ 19.9
UPF1Q92900 KANK2-204ENST00000588787 2952 ntTSL 513.56□□□□□ -0.242e-6■■■■□ 19.9
UPF1Q92900 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC24.47■■□□□ 1.518e-9■■■■□ 19.9
UPF1Q92900 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.178e-9■■■■□ 19.9
UPF1Q92900 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.69■□□□□ 0.98e-9■■■■□ 19.9
UPF1Q92900 MXRA8-207ENST00000474033 1171 ntTSL 1 (best)19.83■□□□□ 0.778e-9■■■■□ 19.9
UPF1Q92900 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.26■□□□□ 0.358e-9■■■■□ 19.9
UPF1Q92900 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.466e-9■■■■□ 19.9
UPF1Q92900 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC21.53■■□□□ 1.046e-9■■■■□ 19.9
UPF1Q92900 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.38■□□□□ 0.376e-9■■■■□ 19.9
UPF1Q92900 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.14■□□□□ 0.336e-9■■■■□ 19.9
UPF1Q92900 PGRMC2-202ENST00000394276 2858 ntTSL 2 BASIC10.73□□□□□ -0.696e-9■■■■□ 19.9
UPF1Q92900 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC18.7■□□□□ 0.582e-13■■■■□ 19.9
UPF1Q92900 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.941e-11■■■■□ 19.9
UPF1Q92900 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.91□□□□□ -1.141e-11■■■■□ 19.9
UPF1Q92900 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.143e-7■■■■□ 19.9
UPF1Q92900 DESI1-201ENST00000263256 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.23e-8■■■■□ 19.9
UPF1Q92900 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.452e-10■■■■□ 19.9
UPF1Q92900 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.47■□□□□ 0.072e-10■■■■□ 19.9
UPF1Q92900 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.94□□□□□ -0.181e-6■■■■□ 19.9
UPF1Q92900 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.271e-6■■■■□ 19.9
UPF1Q92900 SEMA3F-206ENST00000434342 3541 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.471e-6■■■■□ 19.9
UPF1Q92900 FGFR1-236ENST00000531196 842 ntTSL 315.82■□□□□ 0.123e-8■■■■□ 19.9
UPF1Q92900 FGFR1-208ENST00000397108 2870 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.073e-8■■■■□ 19.9
UPF1Q92900 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC32.87■■■□□ 2.859e-6■■■■□ 19.8
UPF1Q92900 ANKRD9-203ENST00000559404 1502 ntTSL 232.43■■■□□ 2.789e-6■■■■□ 19.8
UPF1Q92900 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.759e-6■■■■□ 19.8
UPF1Q92900 ANKRD9-202ENST00000557902 620 ntTSL 331.56■■■□□ 2.649e-6■■■■□ 19.8
UPF1Q92900 RAB1A-205ENST00000494188 771 ntTSL 231.31■■■□□ 2.62e-32■■■■□ 19.8
UPF1Q92900 FAM212B-204ENST00000527570 501 ntTSL 230.81■■■□□ 2.529e-6■■■■□ 19.8
UPF1Q92900 STK25-224ENST00000472181 464 ntTSL 329.57■■■□□ 2.329e-6■■■■□ 19.8
UPF1Q92900 KMT2D-202ENST00000526209 859 ntTSL 328.85■■■□□ 2.219e-11■■■■□ 19.8
UPF1Q92900 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC28.42■■■□□ 2.142e-32■■■■□ 19.8
UPF1Q92900 CCNG2-203ENST00000497512 2051 ntTSL 1 (best)28.29■■■□□ 2.129e-6■■■■□ 19.8
UPF1Q92900 DNMT1-227ENST00000592342 636 ntTSL 327.72■■■□□ 2.039e-6■■■■□ 19.8
UPF1Q92900 C1RL-203ENST00000534950 582 ntTSL 326.85■■□□□ 1.899e-11■■■■□ 19.8
UPF1Q92900 DPH1-207ENST00000571710 2013 ntTSL 1 (best)26.55■■□□□ 1.842e-6■■■■□ 19.8
UPF1Q92900 DNMT1-216ENST00000588952 841 ntTSL 526.01■■□□□ 1.759e-6■■■■□ 19.8
UPF1Q92900 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC24.91■■□□□ 1.589e-6■■■■□ 19.8
UPF1Q92900 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.569e-6■■■■□ 19.8
UPF1Q92900 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.59e-6■■■■□ 19.8
UPF1Q92900 RNF149-202ENST00000424632 2010 ntTSL 224.35■■□□□ 1.499e-11■■■■□ 19.8
UPF1Q92900 ISM2-206ENST00000487738 1076 ntTSL 224.06■■□□□ 1.449e-11■■■■□ 19.8
UPF1Q92900 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.79■■□□□ 1.49e-6■■■■□ 19.8
UPF1Q92900 DPH1-217ENST00000607788 775 ntTSL 523.71■■□□□ 1.392e-6■■■■□ 19.8
UPF1Q92900 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC23.27■■□□□ 1.329e-6■■■■□ 19.8
UPF1Q92900 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.319e-6■■■■□ 19.8
UPF1Q92900 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.39e-6■■■■□ 19.8
UPF1Q92900 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.39e-6■■■■□ 19.8
UPF1Q92900 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.272e-6■■■■□ 19.8
UPF1Q92900 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.57■■□□□ 1.29e-6■■■■□ 19.8
UPF1Q92900 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.29e-6■■■■□ 19.8
UPF1Q92900 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.162e-6■■■■□ 19.8
UPF1Q92900 DPH1-205ENST00000570867 2265 ntTSL 222.01■■□□□ 1.112e-6■■■■□ 19.8
UPF1Q92900 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC21.81■■□□□ 1.082e-32■■■■□ 19.8
UPF1Q92900 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.58■■□□□ 1.059e-6■■■■□ 19.8
UPF1Q92900 ADI1-203ENST00000415131 654 ntTSL 321.37■■□□□ 1.019e-6■■■■□ 19.8
UPF1Q92900 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.77■□□□□ 0.929e-11■■■■□ 19.8
UPF1Q92900 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.874e-8■■■■□ 19.8
UPF1Q92900 SMAD3-214ENST00000560402 590 ntTSL 420.03■□□□□ 0.87e-10■■■■□ 19.8
UPF1Q92900 ITGB2-209ENST00000475170 2125 ntTSL 219.87■□□□□ 0.779e-6■■■■□ 19.8
UPF1Q92900 DPH1-210ENST00000572684 2607 ntTSL 219.71■□□□□ 0.752e-6■■■■□ 19.8
UPF1Q92900 C21orf33-206ENST00000449622 1546 ntTSL 219.56■□□□□ 0.724e-8■■■■□ 19.8
UPF1Q92900 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.654e-8■■■■□ 19.8
Retrieved 100 of 15,879 protein–RNA pairs in 226.6 ms