Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
USH1CQ9Y6N9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
USH1CQ9Y6N9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
USH1CQ9Y6N9 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
USH1CQ9Y6N9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
USH1CQ9Y6N9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.14■□□□□ 0.66
USH1CQ9Y6N9 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.14■□□□□ 0.66
USH1CQ9Y6N9 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 FP475955.4-201ENST00000623131 1990 ntBASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 HLA-G-202ENST00000376815 851 ntBASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 HLA-G-203ENST00000376818 1127 ntBASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.14■□□□□ 0.65
USH1CQ9Y6N9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
USH1CQ9Y6N9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 AL162412.1-201ENST00000567129 965 ntBASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 KRT18P61-201ENST00000585825 1298 ntBASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 AC010536.3-201ENST00000620306 533 ntBASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USH1CQ9Y6N9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
USH1CQ9Y6N9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms