Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
TRAV1-1A0A0B4J248 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 UBQLN4P1-201ENST00000461599 1801 ntBASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 CYP21A1P-202ENST00000354927 1481 ntBASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 AC134043.2-201ENST00000624206 2238 ntBASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 AC012313.1-201ENST00000593393 3059 ntBASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 SRR-208ENST00000576848 588 ntTSL 4 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
TRAV1-1A0A0B4J248 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 OR2A1-AS1-204ENST00000470435 602 ntBASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.02■□□□□ -0
TRAV1-1A0A0B4J248 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 AC124067.4-201ENST00000519691 2379 ntBASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.02□□□□□ -0.01
TRAV1-1A0A0B4J248 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 GRAMD4P2-201ENST00000423297 1097 ntBASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 RPP21-222ENST00000433076 577 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 YBX1P1-201ENST00000445822 960 ntBASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRAV1-1A0A0B4J248 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms