Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC15.58■□□□□ 0.08
FOXA2Q9Y261 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 POU5F1P3-201ENST00000428824 1078 ntBASIC15.57■□□□□ 0.08
FOXA2Q9Y261 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 MIR4651-201ENST00000582622 73 ntBASIC15.57■□□□□ 0.08
FOXA2Q9Y261 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
FOXA2Q9Y261 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 AC008403.3-201ENST00000598924 454 ntBASIC15.56■□□□□ 0.08
FOXA2Q9Y261 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA2Q9Y261 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 CROCCP3-202ENST00000420820 1947 ntBASIC15.55■□□□□ 0.08
FOXA2Q9Y261 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 TSPY20P-201ENST00000450910 630 ntBASIC15.55■□□□□ 0.08
FOXA2Q9Y261 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 KLF2-202ENST00000592003 564 ntTSL 3 BASIC15.55■□□□□ 0.08
FOXA2Q9Y261 AC006058.3-201ENST00000606217 1069 ntBASIC15.55■□□□□ 0.08
FOXA2Q9Y261 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms