Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 VENTXP5-201ENST00000523979 775 ntBASIC21.24■□□□□ 0.99
NOD1Q9Y239 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.24■□□□□ 0.99
NOD1Q9Y239 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 AC005332.1-201ENST00000577698 1310 ntBASIC21.24■□□□□ 0.99
NOD1Q9Y239 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NOD1Q9Y239 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NOD1Q9Y239 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.24■□□□□ 0.99
NOD1Q9Y239 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.23■□□□□ 0.99
NOD1Q9Y239 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NOD1Q9Y239 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 KRT8P11-201ENST00000409686 1436 ntBASIC21.22■□□□□ 0.99
NOD1Q9Y239 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NOD1Q9Y239 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.22■□□□□ 0.99
NOD1Q9Y239 HCG4P8-203ENST00000443049 980 ntBASIC21.22■□□□□ 0.99
NOD1Q9Y239 KRT18P38-201ENST00000449496 1282 ntBASIC21.22■□□□□ 0.99
NOD1Q9Y239 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 AL121894.2-201ENST00000602977 491 ntBASIC21.22■□□□□ 0.99
NOD1Q9Y239 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NOD1Q9Y239 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
NOD1Q9Y239 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.22■□□□□ 0.99
NOD1Q9Y239 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
NOD1Q9Y239 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NOD1Q9Y239 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 AC112907.2-201ENST00000448639 330 ntBASIC21.21■□□□□ 0.99
NOD1Q9Y239 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 AC069148.1-201ENST00000608741 768 ntBASIC21.21■□□□□ 0.99
NOD1Q9Y239 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.21■□□□□ 0.99
NOD1Q9Y239 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NOD1Q9Y239 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NOD1Q9Y239 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NOD1Q9Y239 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NOD1Q9Y239 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NOD1Q9Y239 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NOD1Q9Y239 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
NOD1Q9Y239 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.19■□□□□ 0.98
NOD1Q9Y239 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 AC009237.14-201ENST00000609975 1594 ntBASIC21.19■□□□□ 0.98
NOD1Q9Y239 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms