Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
VIMP08670 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.35■□□□□ 0.69
VIMP08670 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.35■□□□□ 0.69
VIMP08670 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.35■□□□□ 0.69
VIMP08670 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.35■□□□□ 0.69
VIMP08670 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.35■□□□□ 0.69
VIMP08670 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.35■□□□□ 0.69
VIMP08670 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.35■□□□□ 0.69
VIMP08670 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.35■□□□□ 0.69
VIMP08670 CCDC92B-201ENST00000575506 885 ntBASIC19.35■□□□□ 0.69
VIMP08670 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VIMP08670 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VIMP08670 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.35■□□□□ 0.69
VIMP08670 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.35■□□□□ 0.69
VIMP08670 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.34■□□□□ 0.69
VIMP08670 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.34■□□□□ 0.69
VIMP08670 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.34■□□□□ 0.69
VIMP08670 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.34■□□□□ 0.69
VIMP08670 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
VIMP08670 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.34■□□□□ 0.69
VIMP08670 PHGDH-210ENST00000641115 1638 ntBASIC19.34■□□□□ 0.69
VIMP08670 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
VIMP08670 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
VIMP08670 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VIMP08670 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.34■□□□□ 0.69
VIMP08670 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.34■□□□□ 0.69
VIMP08670 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.34■□□□□ 0.69
VIMP08670 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.34■□□□□ 0.69
VIMP08670 AC067852.2-201ENST00000590513 2313 ntBASIC19.34■□□□□ 0.69
VIMP08670 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VIMP08670 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VIMP08670 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VIMP08670 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
VIMP08670 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.33■□□□□ 0.69
VIMP08670 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VIMP08670 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VIMP08670 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VIMP08670 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
VIMP08670 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VIMP08670 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.33■□□□□ 0.68
VIMP08670 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.33■□□□□ 0.68
VIMP08670 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.33■□□□□ 0.68
VIMP08670 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 AC104187.1-201ENST00000607510 612 ntBASIC19.33■□□□□ 0.68
VIMP08670 AL354811.1-201ENST00000610286 706 ntBASIC19.33■□□□□ 0.68
VIMP08670 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.33■□□□□ 0.68
VIMP08670 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VIMP08670 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
VIMP08670 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.33■□□□□ 0.68
VIMP08670 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VIMP08670 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 AC012313.1-201ENST00000593393 3059 ntBASIC19.33■□□□□ 0.68
VIMP08670 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.33■□□□□ 0.68
VIMP08670 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 AL512353.2-201ENST00000448759 1962 ntBASIC19.32■□□□□ 0.68
VIMP08670 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.32■□□□□ 0.68
VIMP08670 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
VIMP08670 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VIMP08670 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
VIMP08670 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.32■□□□□ 0.68
VIMP08670 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.32■□□□□ 0.68
VIMP08670 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.32■□□□□ 0.68
VIMP08670 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.32■□□□□ 0.68
VIMP08670 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VIMP08670 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms