Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 CDK16-218ENST00000522883 601 ntTSL 418.82■□□□□ 0.65e-6■■■■□ 20.6
UPF1Q92900 CDK16-210ENST00000517997 562 ntTSL 418.15■□□□□ 0.55e-6■■■■□ 20.6
UPF1Q92900 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.495e-11■■■■□ 20.6
UPF1Q92900 PLEKHA2-204ENST00000521123 566 ntTSL 317.98■□□□□ 0.479e-8■■■■□ 20.6
UPF1Q92900 PHF20-202ENST00000374000 1814 ntTSL 1 (best)17.93■□□□□ 0.465e-6■■■■□ 20.6
UPF1Q92900 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.383e-8■■■■□ 20.6
UPF1Q92900 PHF20-201ENST00000339089 1997 ntTSL 217.36■□□□□ 0.375e-6■■■■□ 20.6
UPF1Q92900 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.366e-6■■■■□ 20.6
UPF1Q92900 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.3■□□□□ 0.365e-6■■■■□ 20.6
UPF1Q92900 MAPK3-209ENST00000478356 961 ntTSL 516.99■□□□□ 0.315e-6■■■■□ 20.6
UPF1Q92900 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC16.76■□□□□ 0.275e-6■■■■□ 20.6
UPF1Q92900 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.06■□□□□ 0.166e-8■■■■□ 20.6
UPF1Q92900 PHF20-211ENST00000481202 1635 ntTSL 1 (best)15.82■□□□□ 0.125e-6■■■■□ 20.6
UPF1Q92900 HLA-B-254ENST00000497377 917 nt15.69■□□□□ 0.15e-6■■■■□ 20.6
UPF1Q92900 G6PC-202ENST00000585489 1097 ntTSL 5 BASIC15.53■□□□□ 0.081e-21■■■■□ 20.6
UPF1Q92900 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.055e-6■■■■□ 20.6
UPF1Q92900 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.035e-6■■■■□ 20.6
UPF1Q92900 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.011e-6■■■■□ 20.6
UPF1Q92900 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 06e-8■■■■□ 20.6
UPF1Q92900 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.051e-6■■■■□ 20.6
UPF1Q92900 HLA-B-253ENST00000481849 753 nt14.3□□□□□ -0.125e-6■■■■□ 20.6
UPF1Q92900 CDK16-204ENST00000457458 3158 ntTSL 1 (best) BASIC14.08□□□□□ -0.155e-6■■■■□ 20.6
UPF1Q92900 MTA2-202ENST00000524902 2577 ntTSL 1 (best) BASIC13.94□□□□□ -0.181e-6■■■■□ 20.6
UPF1Q92900 MEF2D-202ENST00000360595 3194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.231e-6■■■■□ 20.6
UPF1Q92900 MEF2D-204ENST00000464356 5598 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.241e-6■■■■□ 20.6
UPF1Q92900 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.326e-8■■■■□ 20.6
UPF1Q92900 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.345e-6■■■■□ 20.6
UPF1Q92900 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.385e-6■■■■□ 20.6
UPF1Q92900 C11orf54-214ENST00000540113 2442 ntTSL 1 (best) BASIC12.56□□□□□ -0.45e-11■■■■□ 20.6
UPF1Q92900 MAPK3-208ENST00000473431 368 ntTSL 211.98□□□□□ -0.495e-6■■■■□ 20.6
UPF1Q92900 C11orf54-201ENST00000331239 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.515e-11■■■■□ 20.6
UPF1Q92900 HLA-B-258ENST00000640615 240 ntBASIC11.76□□□□□ -0.535e-6■■■■□ 20.6
UPF1Q92900 C11orf54-215ENST00000617482 2417 ntTSL 3 BASIC11.75□□□□□ -0.535e-11■■■■□ 20.6
UPF1Q92900 CCNY-204ENST00000374706 3940 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.546e-8■■■■□ 20.6
UPF1Q92900 IL22RA1-201ENST00000270800 2798 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.75e-6■■■■□ 20.6
UPF1Q92900 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC8.95□□□□□ -0.985e-6■■■■□ 20.6
UPF1Q92900 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.035e-6■■■■□ 20.6
UPF1Q92900 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC7.39□□□□□ -1.235e-11■■■■□ 20.6
UPF1Q92900 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.23□□□□□ -1.255e-6■■■■□ 20.6
UPF1Q92900 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC28.39■■■□□ 2.142e-8■■■■□ 20.6
UPF1Q92900 SPN-205ENST00000563039 1853 ntTSL 524.06■■□□□ 1.442e-8■■■■□ 20.6
UPF1Q92900 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.99■□□□□ 0.311e-12■■■■□ 20.6
UPF1Q92900 ATG13-211ENST00000528494 2351 ntTSL 1 (best) BASIC14.89□□□□□ -0.031e-12■■■■□ 20.6
UPF1Q92900 MAPK3-214ENST00000490298 1718 ntTSL 535.65■■■■□ 3.32e-6■■■■□ 20.6
UPF1Q92900 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.69■■■■□ 3.142e-6■■■■□ 20.6
UPF1Q92900 MAPK3-207ENST00000466521 1878 ntTSL 531.84■■■□□ 2.692e-6■■■■□ 20.6
UPF1Q92900 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.682e-6■■■■□ 20.6
UPF1Q92900 MAPK3-213ENST00000485579 739 ntTSL 223.69■■□□□ 1.382e-6■■■■□ 20.6
UPF1Q92900 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.42■□□□□ 0.382e-6■■■■□ 20.6
UPF1Q92900 ATG13-224ENST00000578626 587 ntTSL 524.49■■□□□ 1.511e-7■■■■□ 20.6
UPF1Q92900 ATG13-223ENST00000577256 613 ntTSL 424.49■■□□□ 1.511e-7■■■■□ 20.6
UPF1Q92900 ATG13-230ENST00000583249 544 ntTSL 524.16■■□□□ 1.461e-7■■■■□ 20.6
UPF1Q92900 ATG13-229ENST00000582547 600 ntTSL 423.08■■□□□ 1.291e-7■■■■□ 20.6
UPF1Q92900 ATG13-227ENST00000581416 741 ntTSL 323.06■■□□□ 1.281e-7■■■■□ 20.6
UPF1Q92900 ATG13-226ENST00000580238 624 ntTSL 422.84■■□□□ 1.251e-7■■■■□ 20.6
UPF1Q92900 ATG13-210ENST00000528145 579 ntTSL 317.86■□□□□ 0.451e-7■■■■□ 20.6
UPF1Q92900 ATG13-221ENST00000533325 1021 ntTSL 517.08■□□□□ 0.321e-7■■■■□ 20.6
UPF1Q92900 HMBOX1-209ENST00000522468 817 ntTSL 320.91■□□□□ 0.944e-8■■■■□ 20.6
UPF1Q92900 VPS39-201ENST00000318006 4844 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.63e-10■■■■□ 20.6
UPF1Q92900 VPS39-205ENST00000562258 4160 ntTSL 210.55□□□□□ -0.723e-10■■■■□ 20.6
UPF1Q92900 VPS39-214ENST00000614932 2835 nt10.15□□□□□ -0.783e-10■■■■□ 20.6
UPF1Q92900 DDX3X-212ENST00000616050 818 ntTSL 517.49■□□□□ 0.392e-8■■■■□ 20.6
UPF1Q92900 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.322e-8■■■■□ 20.6
UPF1Q92900 DDX3X-216ENST00000626301 3013 ntTSL 5 BASIC11.72□□□□□ -0.532e-8■■■■□ 20.6
UPF1Q92900 DDX3X-215ENST00000625837 3237 ntTSL 5 BASIC11.5□□□□□ -0.572e-8■■■■□ 20.6
UPF1Q92900 DDX3X-203ENST00000457138 5346 ntTSL 2 BASIC10.9□□□□□ -0.662e-8■■■■□ 20.6
UPF1Q92900 DDX3X-220ENST00000630370 3120 ntTSL 510.66□□□□□ -0.72e-8■■■■□ 20.6
UPF1Q92900 DDX3X-217ENST00000629496 5023 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.782e-8■■■■□ 20.6
UPF1Q92900 DDX3X-221ENST00000630858 3181 ntTSL 59.95□□□□□ -0.822e-8■■■■□ 20.6
UPF1Q92900 DDX3X-218ENST00000629785 3457 ntTSL 59.72□□□□□ -0.852e-8■■■■□ 20.6
UPF1Q92900 DDX3X-219ENST00000630255 3289 ntTSL 59.44□□□□□ -0.92e-8■■■■□ 20.6
UPF1Q92900 DDX3X-204ENST00000478993 3397 ntTSL 1 (best)9.44□□□□□ -0.92e-8■■■■□ 20.6
UPF1Q92900 MRPS30-201ENST00000230914 4331 ntTSL 55.15□□□□□ -1.587e-7■■■■□ 20.6
UPF1Q92900 HNF4A-203ENST00000372920 3340 ntTSL 1 (best)17.36■□□□□ 0.372e-8■■■■□ 20.6
UPF1Q92900 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.27■□□□□ 0.689e-7■■■■□ 20.6
UPF1Q92900 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.469e-7■■■■□ 20.6
UPF1Q92900 RPS6KA1-216ENST00000530003 3023 ntTSL 5 BASIC11.12□□□□□ -0.639e-7■■■■□ 20.6
UPF1Q92900 RPS6KA1-202ENST00000374163 3202 ntTSL 210.37□□□□□ -0.759e-7■■■■□ 20.6
UPF1Q92900 LYRM7-204ENST00000521227 285 ntTSL 312.08□□□□□ -0.483e-23■■■■□ 20.6
UPF1Q92900 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.165e-6■■■■□ 20.6
UPF1Q92900 TIAF1-201ENST00000359450 5337 ntAPPRIS P1 BASIC13.57□□□□□ -0.242e-7■■■■□ 20.6
UPF1Q92900 MYO18A-205ENST00000529578 2667 ntTSL 213.23□□□□□ -0.292e-7■■■■□ 20.6
UPF1Q92900 MYO18A-207ENST00000530254 6479 ntTSL 1 (best)13.11□□□□□ -0.312e-7■■■■□ 20.6
UPF1Q92900 MYO18A-223ENST00000628822 7501 ntAPPRIS ALT1 TSL 5 BASIC11.01□□□□□ -0.652e-7■■■■□ 20.6
UPF1Q92900 MYO18A-209ENST00000531253 7504 ntAPPRIS ALT1 TSL 5 BASIC11.01□□□□□ -0.652e-7■■■■□ 20.6
UPF1Q92900 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC10.68□□□□□ -0.72e-7■■■■□ 20.6
UPF1Q92900 MYO18A-214ENST00000533112 7522 ntTSL 1 (best) BASIC10.39□□□□□ -0.752e-7■■■■□ 20.6
UPF1Q92900 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.081e-6■■■■□ 20.6
UPF1Q92900 AL355312.2-202ENST00000628047 876 ntTSL 56.65□□□□□ -1.341e-6■■■■□ 20.6
UPF1Q92900 ERBB2-219ENST00000584601 4792 ntTSL 2 BASIC12.1□□□□□ -0.476e-7■■■■□ 20.6
UPF1Q92900 ALDH1A2-203ENST00000430119 3049 ntTSL 29.39□□□□□ -0.913e-8■■■■□ 20.6
UPF1Q92900 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.87■□□□□ 0.452e-7■■■■□ 20.5
UPF1Q92900 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.32e-7■■■■□ 20.5
UPF1Q92900 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC32.57■■■□□ 2.84e-6■■■■□ 20.5
UPF1Q92900 EMC10-207ENST00000599293 1926 ntTSL 330.56■■■□□ 2.484e-6■■■■□ 20.5
UPF1Q92900 EMC10-208ENST00000601780 2178 ntTSL 1 (best)30.35■■■□□ 2.454e-6■■■■□ 20.5
UPF1Q92900 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.77■■■□□ 2.24e-6■■■■□ 20.5
UPF1Q92900 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.34e-6■■■■□ 20.5
UPF1Q92900 CYB561-221ENST00000585153 811 ntTSL 318.6■□□□□ 0.572e-6■■■■□ 20.5
UPF1Q92900 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.67■■■□□ 2.52e-7■■■■□ 20.5
Retrieved 100 of 15,879 protein–RNA pairs in 150.5 ms