Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPNE1Q99829 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPNE1Q99829 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CPNE1Q99829 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CPNE1Q99829 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CPNE1Q99829 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.69
CPNE1Q99829 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CPNE1Q99829 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CPNE1Q99829 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.33■□□□□ 0.68
CPNE1Q99829 AC097658.1-201ENST00000475555 843 ntBASIC19.33■□□□□ 0.68
CPNE1Q99829 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.33■□□□□ 0.68
CPNE1Q99829 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.33■□□□□ 0.68
CPNE1Q99829 MYC-209ENST00000641252 345 ntBASIC19.33■□□□□ 0.68
CPNE1Q99829 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CPNE1Q99829 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.33■□□□□ 0.68
CPNE1Q99829 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CPNE1Q99829 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CPNE1Q99829 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.32■□□□□ 0.68
CPNE1Q99829 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CPNE1Q99829 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.32■□□□□ 0.68
CPNE1Q99829 TSPY6P-201ENST00000448518 926 ntBASIC19.32■□□□□ 0.68
CPNE1Q99829 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CPNE1Q99829 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.32■□□□□ 0.68
CPNE1Q99829 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.32■□□□□ 0.68
CPNE1Q99829 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.32■□□□□ 0.68
CPNE1Q99829 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.32■□□□□ 0.68
CPNE1Q99829 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CPNE1Q99829 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CPNE1Q99829 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CPNE1Q99829 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.32■□□□□ 0.68
CPNE1Q99829 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.31■□□□□ 0.68
CPNE1Q99829 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CPNE1Q99829 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.31■□□□□ 0.68
CPNE1Q99829 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CPNE1Q99829 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.31■□□□□ 0.68
CPNE1Q99829 NCF1B-203ENST00000435988 1254 ntBASIC19.31■□□□□ 0.68
CPNE1Q99829 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CPNE1Q99829 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.31■□□□□ 0.68
CPNE1Q99829 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CPNE1Q99829 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CPNE1Q99829 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.31■□□□□ 0.68
CPNE1Q99829 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CPNE1Q99829 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.31■□□□□ 0.68
CPNE1Q99829 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CPNE1Q99829 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CPNE1Q99829 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CPNE1Q99829 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.3■□□□□ 0.68
CPNE1Q99829 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.3■□□□□ 0.68
CPNE1Q99829 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.3■□□□□ 0.68
CPNE1Q99829 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.3■□□□□ 0.68
CPNE1Q99829 PNMA6B-201ENST00000538162 1200 ntBASIC19.3■□□□□ 0.68
CPNE1Q99829 AC060766.5-201ENST00000590539 871 ntBASIC19.3■□□□□ 0.68
CPNE1Q99829 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.3■□□□□ 0.68
CPNE1Q99829 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.3■□□□□ 0.68
CPNE1Q99829 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CPNE1Q99829 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms