Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.86■□□□□ 0.61
PCNAP12004 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.86■□□□□ 0.61
PCNAP12004 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.86■□□□□ 0.61
PCNAP12004 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.86■□□□□ 0.61
PCNAP12004 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.86■□□□□ 0.61
PCNAP12004 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.86■□□□□ 0.61
PCNAP12004 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.86■□□□□ 0.61
PCNAP12004 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCNAP12004 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
PCNAP12004 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
PCNAP12004 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.85■□□□□ 0.61
PCNAP12004 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.85■□□□□ 0.61
PCNAP12004 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.85■□□□□ 0.61
PCNAP12004 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.85■□□□□ 0.61
PCNAP12004 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.85■□□□□ 0.61
PCNAP12004 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.85■□□□□ 0.61
PCNAP12004 AC093484.2-201ENST00000580996 2166 ntBASIC18.85■□□□□ 0.61
PCNAP12004 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PCNAP12004 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
PCNAP12004 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.84■□□□□ 0.61
PCNAP12004 UNC93B4-201ENST00000505679 747 ntBASIC18.84■□□□□ 0.61
PCNAP12004 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
PCNAP12004 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 AC020763.4-201ENST00000623414 4170 ntBASIC18.84■□□□□ 0.61
PCNAP12004 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
PCNAP12004 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
PCNAP12004 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PCNAP12004 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.84■□□□□ 0.61
PCNAP12004 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.84■□□□□ 0.61
PCNAP12004 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.84■□□□□ 0.61
PCNAP12004 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCNAP12004 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PCNAP12004 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PCNAP12004 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.83■□□□□ 0.61
PCNAP12004 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PCNAP12004 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PCNAP12004 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.83■□□□□ 0.6
PCNAP12004 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.83■□□□□ 0.6
PCNAP12004 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.83■□□□□ 0.6
PCNAP12004 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.83■□□□□ 0.6
PCNAP12004 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.83■□□□□ 0.6
PCNAP12004 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
PCNAP12004 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PCNAP12004 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PCNAP12004 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PCNAP12004 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.83■□□□□ 0.6
PCNAP12004 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCNAP12004 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.82■□□□□ 0.6
PCNAP12004 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCNAP12004 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PCNAP12004 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PCNAP12004 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms