Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.02■□□□□ -0
CXCL1P09341 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.02■□□□□ -0
CXCL1P09341 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
CXCL1P09341 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.02■□□□□ -0
CXCL1P09341 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
CXCL1P09341 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.02■□□□□ -0
CXCL1P09341 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 MIR4767-201ENST00000582827 78 ntBASIC15.02■□□□□ -0
CXCL1P09341 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.02■□□□□ -0
CXCL1P09341 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.02□□□□□ -0.01
CXCL1P09341 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
CXCL1P09341 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CXCL1P09341 ABALON-201ENST00000629058 1903 ntBASIC15.02□□□□□ -0.01
CXCL1P09341 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.01□□□□□ -0.01
CXCL1P09341 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.01□□□□□ -0.01
CXCL1P09341 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC15.01□□□□□ -0.01
CXCL1P09341 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC15.01□□□□□ -0.01
CXCL1P09341 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 ESPNP-201ENST00000270691 2015 ntBASIC15.01□□□□□ -0.01
CXCL1P09341 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.01□□□□□ -0.01
CXCL1P09341 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC15.01□□□□□ -0.01
CXCL1P09341 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC15.01□□□□□ -0.01
CXCL1P09341 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 AC008175.2-201ENST00000612840 297 ntBASIC15.01□□□□□ -0.01
CXCL1P09341 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CXCL1P09341 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.01□□□□□ -0.01
CXCL1P09341 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CXCL1P09341 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CXCL1P09341 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC15□□□□□ -0.01
CXCL1P09341 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CXCL1P09341 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC15□□□□□ -0.01
CXCL1P09341 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15□□□□□ -0.01
CXCL1P09341 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CXCL1P09341 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC15□□□□□ -0.01
CXCL1P09341 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC15□□□□□ -0.01
CXCL1P09341 LINC00896-202ENST00000609602 2128 ntBASIC15□□□□□ -0.01
CXCL1P09341 MIR2861-201ENST00000636310 90 ntBASIC15□□□□□ -0.01
CXCL1P09341 AC008764.6-201ENST00000595909 2069 ntBASIC15□□□□□ -0.01
CXCL1P09341 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CXCL1P09341 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms